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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261444 through 18771 annotations produced 1 hits



():

Annotation Number : CG3638
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261444
Gbrowse : chrX:1111110-1130666 (-) // 100.0 //
Probeset : 1637384_a_at
Accessions : protein= NP_726720; /// NP_726721; /// NP_726722;, nucleotide= NM_166872; /// NM_166873; /// NM_166874;
Pathway : engulfment // inferred from mutant phenotype /// 0016319 // mushroom body development // inferred from mutant phenotype
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from sequen
FlyMine data for FBgn0261444.
VDRC has 2 RNAi stocks for FBgn0261444 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain172 ± 244 of 4 2.60Up
Head128 ± 224 of 4 1.90None
Eye29 ± 34 of 4 0.45Down
Thoracicoabdominal ganglion95 ± 44 of 4 1.40Up
Salivary gland38 ± 54 of 4 0.58Down
Crop52 ± 44 of 4 0.80None
Midgut48 ± 54 of 4 0.70None
Tubule46 ± 24 of 4 0.70Down
Hindgut68 ± 94 of 4 1.00None
Heart62 ± 54 of 4 0.94None
Fat body319 ± 674 of 4 4.82Up
Ovary47 ± 14 of 4 0.70Down
Testis13 ± 04 of 4 0.20Down
Male accessory glands26 ± 14 of 4 0.40Down
Virgin spermatheca188 ± 434 of 4 2.85None
Mated spermatheca123 ± 114 of 4 1.86Up
Adult carcass97 ± 124 of 4 1.50None
Larval CNS332 ± 1184 of 4 5.02Up
Larval Salivary gland31 ± 34 of 4 0.48Down
Larval midgut64 ± 64 of 4 0.98None
Larval tubule96 ± 94 of 4 1.50Up
Larval hindgut100 ± 24 of 4 1.52Up
Larval fat body70 ± 94 of 4 1.10None
Larval trachea25 ± 14 of 4 0.39Down
Larval carcass59 ± 74 of 4 0.90None
S2 cells (growing)35 ± 54 of 4 0.54Down
Whole fly66 ± 54 of 4

Looking for FBgn0261444. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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