FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261445 through 18771 annotations produced 1 hits

():

Annotation Number : CG10072
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261445
Gbrowse : chr3L:6952646-6957902 (-) // 100.0 //
Probeset : 1629352_at
Accessions : protein= NP_476980;, nucleotide= NM_057632;
Pathway : open tracheal system // inferred from genetic interaction /// 0007427 // epithelial cell migration
Interpro : open tracheal system // inferred from mutant phenotype /// 0007427 // epithelial cell migration
FlyMine data for FBgn0261445.
BioGrid reports that CG10072 interacts with CG18361 CG2759 CG2759 CG4889 CG4889 CG7223 CG4608 CG1560 .
VDRC has 1 RNAi stocks for FBgn0261445 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	287 ± 14	4 of 4	1.10	None
Head	190 ± 4	4 of 4	0.70	Down
Eye	168 ± 16	4 of 4	0.63	Down
Thoracicoabdominal ganglion	295 ± 10	4 of 4	1.10	None
Salivary gland	3806 ± 109	4 of 4	14.28	Up
Crop	290 ± 25	4 of 4	1.10	None
Midgut	861 ± 9	4 of 4	3.20	Up
Tubule	1633 ± 73	4 of 4	6.10	Up
Hindgut	366 ± 21	4 of 4	1.40	Up
Heart	198 ± 9	4 of 4	0.75	Down
Fat body	86 ± 13	4 of 4	0.33	Down
Ovary	422 ± 11	4 of 4	1.60	Up
Testis	38 ± 3	4 of 4	0.10	Down
Male accessory glands	124 ± 18	4 of 4	0.50	Down
Virgin spermatheca	465 ± 19	4 of 4	1.74	Up
Mated spermatheca	437 ± 46	4 of 4	1.64	Up
Adult carcass	98 ± 4	4 of 4	0.40	Down
Larval CNS	354 ± 21	4 of 4	1.33	Up
Larval Salivary gland	14 ± 1	4 of 4	0.05	Down
Larval midgut	1275 ± 73	4 of 4	4.79	Up
Larval tubule	1408 ± 87	4 of 4	5.30	Up
Larval hindgut	835 ± 71	4 of 4	3.14	Up
Larval fat body	321 ± 26	4 of 4	1.20	None
Larval trachea	135 ± 12	4 of 4	0.51	Down
Larval carcass	228 ± 80	4 of 4	0.86	None
S2 cells (growing)	785 ± 36	4 of 4	2.95	Up
Whole fly	266 ± 21	4 of 4

Looking for FBgn0261445. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720