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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261445 through 18771 annotations produced 1 hits



():

Annotation Number : CG10072
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261445
Gbrowse : chr3L:6952646-6957902 (-) // 100.0 //
Probeset : 1629352_at
Accessions : protein= NP_476980;, nucleotide= NM_057632;
Pathway : open tracheal system // inferred from genetic interaction /// 0007427 // epithelial cell migration
Interpro : open tracheal system // inferred from mutant phenotype /// 0007427 // epithelial cell migration
FlyMine data for FBgn0261445.
BioGrid reports that CG10072 interacts with CG18361 CG2759 CG2759 CG4889 CG4889 CG7223 CG4608 CG1560 .
VDRC has 1 RNAi stocks for FBgn0261445 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain287 144 of 4 1.10None
Head190 44 of 4 0.70Down
Eye168 164 of 4 0.63Down
Thoracicoabdominal ganglion295 104 of 4 1.10None
Salivary gland3806 1094 of 414.28Up
Crop290 254 of 4 1.10None
Midgut861 94 of 4 3.20Up
Tubule1633 734 of 4 6.10Up
Hindgut366 214 of 4 1.40Up
Heart198 94 of 4 0.75Down
Fat body86 134 of 4 0.33Down
Ovary422 114 of 4 1.60Up
Testis38 34 of 4 0.10Down
Male accessory glands124 184 of 4 0.50Down
Virgin spermatheca465 194 of 4 1.74Up
Mated spermatheca437 464 of 4 1.64Up
Adult carcass98 44 of 4 0.40Down
Larval CNS354 214 of 4 1.33Up
Larval Salivary gland14 14 of 4 0.05Down
Larval midgut1275 734 of 4 4.79Up
Larval tubule1408 874 of 4 5.30Up
Larval hindgut835 714 of 4 3.14Up
Larval fat body321 264 of 4 1.20None
Larval trachea135 124 of 4 0.51Down
Larval carcass228 804 of 4 0.86None
S2 cells (growing)785 364 of 4 2.95Up
Whole fly266 214 of 4

Looking for FBgn0261445. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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