Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261446 through 18771 annotations produced 1 hits



():

Annotation Number : CG13377
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261446
Gbrowse : chrX:152365-158028 (-) // 100.0 //
Probeset : 1640159_at
Accessions : protein= NP_569835;, nucleotide= NM_130479;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003858 // 3-hydroxybutyrate dehydrogenase acti
FlyMine data for FBgn0261446.
BioGrid reports that CG13377 interacts with CG31363 CG6891 .
VDRC has 3 RNAi stocks for FBgn0261446 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 14 of 4 0.10Down
Head157 ± 74 of 4 2.30Up
Eye34 ± 34 of 4 0.52Down
Thoracicoabdominal ganglion11 ± 14 of 4 0.20Down
Salivary gland41 ± 24 of 4 0.62Down
Crop339 ± 224 of 4 5.00Up
Midgut25 ± 14 of 4 0.40Down
Tubule19 ± 23 of 4 0.30Down
Hindgut151 ± 44 of 4 2.20Up
Heart37 ± 34 of 4 0.56Down
Fat body43 ± 94 of 4 0.65Down
Ovary49 ± 34 of 4 0.70None
Testis22 ± 04 of 4 0.30Down
Male accessory glands27 ± 34 of 4 0.40Down
Virgin spermatheca293 ± 164 of 4 4.35Up
Mated spermatheca392 ± 294 of 4 5.81Up
Adult carcass178 ± 54 of 4 2.60Up
Larval CNS37 ± 84 of 4 0.55Down
Larval Salivary gland41 ± 04 of 4 0.61Down
Larval midgut34 ± 34 of 4 0.50Down
Larval tubule11 ± 22 of 4 0.20Down
Larval hindgut270 ± 194 of 4 4.00Up
Larval fat body12 ± 13 of 4 0.20Down
Larval trachea984 ± 964 of 414.58Up
Larval carcass1321 ± 1274 of 419.58Up
S2 cells (growing)14 ± 04 of 4 0.22Down
Whole fly67 ± 74 of 4

Looking for FBgn0261446. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime