FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261451 through 18771 annotations produced 5 hits

():

Annotation Number : HDC17121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261451
Gbrowse : chrX:2406913-2407778 (-) // 100.0 //
Probeset : 1637281_at
Accessions : protein= NP_001027033; /// NP_001027034; /// NP_001027035; /// NP_001027036; /// NP_001027037; /// NP_001027038; /// NP_001096869; /// NP_001162648;, nucleotide= NM_001031862; /// NM_001031863; /// NM_001031864; /// NM_001031865; /// NM_001031866; /// NM_001031867; /// NM_001103399; /// NM_001169177;
Pathway : 0031012 // extracellular matrix // inferred from electronic annotation
FlyMine data for FBgn0261451.
TRiP has 3 RNAi stocks for FBgn0261451 available for purchase.
VDRC has 3 RNAi stocks for FBgn0261451 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	1.60	None
Head	1 ± 0	0 of 4	1.80	None
Eye	2 ± 1	0 of 4	3.92	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.80	None
Salivary gland	1 ± 0	0 of 4	2.73	None
Crop	1 ± 1	0 of 4	2.60	None
Midgut	1 ± 0	0 of 4	2.00	None
Tubule	0 ± 0	0 of 4	1.30	None
Hindgut	1 ± 0	0 of 4	2.50	None
Heart	0 ± 0	0 of 4	0.96	None
Fat body	1 ± 0	0 of 4	2.15	None
Ovary	0 ± 0	0 of 4	0.50	None
Testis	1 ± 0	0 of 4	1.60	None
Male accessory glands	1 ± 0	0 of 4	2.80	None
Virgin spermatheca	1 ± 0	0 of 4	2.81	None
Mated spermatheca	0 ± 0	0 of 4	1.15	None
Adult carcass	1 ± 0	0 of 4	1.50	None
Larval CNS	1 ± 1	0 of 4	2.96	None
Larval Salivary gland	2 ± 0	0 of 4	4.08	Up
Larval midgut	1 ± 1	0 of 4	2.73	None
Larval tubule	2 ± 1	0 of 4	3.50	None
Larval hindgut	1 ± 1	0 of 4	2.42	None
Larval fat body	3 ± 1	0 of 4	5.10	None
Larval trachea	3 ± 2	0 of 4	4.73	None
Larval carcass	0 ± 0	0 of 4	0.85	None
S2 cells (growing)	1 ± 0	0 of 4	2.85	None
Whole fly	0 ± 0	0 of 4

():

Annotation Number : CG7981
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261451
Gbrowse : chrX:2374590-2399583 (-) // 100.0 //
Probeset : 1625116_at
Accessions : protein= NP_001027033; /// NP_001027034; /// NP_001027035; /// NP_001027036; /// NP_001027037; /// NP_001027038; /// NP_001096869; /// NP_001162648;, nucleotide= NM_001031862; /// NM_001031863; /// NM_001031864; /// NM_001031865; /// NM_001031866; /// NM_001031867; /// NM_001103399; /// NM_001169177;
Pathway : 0031012 // extracellular matrix // inferred from electronic annotation
FlyMine data for FBgn0261451.
BioGrid reports that CG7981 interacts with CG2328 CG2328 CG3938 CG3938 CG4654 CG6376 CG2328 CG2328 .
TRiP has 3 RNAi stocks for FBgn0261451 available for purchase.
VDRC has 3 RNAi stocks for FBgn0261451 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	182 ± 5	4 of 4	3.30	Up
Head	80 ± 8	4 of 4	1.40	None
Eye	57 ± 4	4 of 4	1.04	None
Thoracicoabdominal ganglion	492 ± 18	4 of 4	8.80	Up
Salivary gland	584 ± 14	4 of 4	10.44	Up
Crop	113 ± 10	4 of 4	2.00	Up
Midgut	172 ± 11	4 of 4	3.10	Up
Tubule	59 ± 7	4 of 4	1.10	None
Hindgut	129 ± 8	4 of 4	2.30	Up
Heart	103 ± 13	4 of 4	1.85	Up
Fat body	47 ± 16	4 of 4	0.85	None
Ovary	44 ± 2	4 of 4	0.80	None
Testis	29 ± 2	4 of 4	0.50	Down
Male accessory glands	43 ± 4	4 of 4	0.80	None
Virgin spermatheca	64 ± 1	4 of 4	1.15	None
Mated spermatheca	91 ± 12	4 of 4	1.63	None
Adult carcass	73 ± 4	4 of 4	1.30	Up
Larval CNS	332 ± 61	4 of 4	5.94	Up
Larval Salivary gland	181 ± 15	4 of 4	3.24	Up
Larval midgut	384 ± 32	4 of 4	6.87	Up
Larval tubule	252 ± 4	4 of 4	4.50	Up
Larval hindgut	225 ± 24	4 of 4	4.02	Up
Larval fat body	5154 ± 526	4 of 4	92.20	Up
Larval trachea	455 ± 60	4 of 4	8.15	Up
Larval carcass	139 ± 10	4 of 4	2.49	Up
S2 cells (growing)	120 ± 8	4 of 4	2.15	Up
Whole fly	55 ± 4	4 of 4

():

Annotation Number : CG7981
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261451
Gbrowse : chrX:2365015-2399583 (-) // 100.0 //
Probeset : 1641442_a_at
Accessions : protein= NP_001027033; /// NP_001027034; /// NP_001027035; /// NP_001027036; /// NP_001027037; /// NP_001027038; /// NP_001096869; /// NP_001162648;, nucleotide= NM_001031862; /// NM_001031863; /// NM_001031864; /// NM_001031865; /// NM_001031866; /// NM_001031867; /// NM_001103399; /// NM_001169177;
Pathway : 0031012 // extracellular matrix // inferred from electronic annotation
FlyMine data for FBgn0261451.
BioGrid reports that CG7981 interacts with CG2328 CG2328 CG3938 CG3938 CG4654 CG6376 CG2328 CG2328 .
TRiP has 3 RNAi stocks for FBgn0261451 available for purchase.
VDRC has 3 RNAi stocks for FBgn0261451 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	262 ± 5	4 of 4	2.90	Up
Head	136 ± 16	4 of 4	1.50	None
Eye	235 ± 30	4 of 4	2.60	Up
Thoracicoabdominal ganglion	412 ± 22	4 of 4	4.50	Up
Salivary gland	221 ± 26	4 of 4	2.44	Up
Crop	252 ± 9	4 of 4	2.80	Up
Midgut	62 ± 3	4 of 4	0.70	Down
Tubule	29 ± 1	4 of 4	0.30	Down
Hindgut	253 ± 7	4 of 4	2.80	Up
Heart	243 ± 22	4 of 4	2.68	Up
Fat body	29 ± 6	4 of 4	0.33	Down
Ovary	77 ± 1	4 of 4	0.90	None
Testis	24 ± 1	4 of 4	0.30	Down
Male accessory glands	163 ± 14	4 of 4	1.80	Up
Virgin spermatheca	25 ± 1	4 of 4	0.28	Down
Mated spermatheca	35 ± 4	4 of 4	0.39	Down
Adult carcass	96 ± 12	4 of 4	1.10	None
Larval CNS	53 ± 10	4 of 4	0.59	Down
Larval Salivary gland	45 ± 3	4 of 4	0.50	Down
Larval midgut	34 ± 2	4 of 4	0.38	Down
Larval tubule	30 ± 3	4 of 4	0.30	Down
Larval hindgut	233 ± 16	4 of 4	2.57	Up
Larval fat body	174 ± 16	4 of 4	1.90	Up
Larval trachea	2424 ± 146	4 of 4	26.72	Up
Larval carcass	78 ± 4	4 of 4	0.87	None
S2 cells (growing)	109 ± 9	4 of 4	1.21	None
Whole fly	90 ± 5	4 of 4

():

Annotation Number : CG12497
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261451
Gbrowse : chrX:2415552-2418402 (-) // 100.0 //
Probeset : 1640189_at
Accessions : protein= NP_001027033; /// NP_001027034; /// NP_001027035; /// NP_001027036; /// NP_001027037; /// NP_001027038; /// NP_001096869; /// NP_001162648;, nucleotide= NM_001031862; /// NM_001031863; /// NM_001031864; /// NM_001031865; /// NM_001031866; /// NM_001031867; /// NM_001103399; /// NM_001169177;
Pathway : 0031012 // extracellular matrix // inferred from electronic annotation
FlyMine data for FBgn0261451.
TRiP has 3 RNAi stocks for FBgn0261451 available for purchase.
VDRC has 3 RNAi stocks for FBgn0261451 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 0	1 of 4	2.90	Up
Head	4 ± 1	0 of 4	1.30	None
Eye	2 ± 1	0 of 4	0.71	None
Thoracicoabdominal ganglion	11 ± 1	2 of 4	3.30	Up
Salivary gland	27 ± 7	0 of 4	7.84	Up
Crop	15 ± 2	0 of 4	4.50	Up
Midgut	11 ± 2	0 of 4	3.40	Up
Tubule	6 ± 0	0 of 4	1.80	Up
Hindgut	13 ± 1	2 of 4	4.00	Up
Heart	3 ± 1	0 of 4	1.01	None
Fat body	6 ± 7	0 of 4	1.96	None
Ovary	3 ± 1	0 of 4	0.90	None
Testis	1 ± 0	0 of 4	0.30	None
Male accessory glands	6 ± 3	0 of 4	1.90	None
Virgin spermatheca	6 ± 1	0 of 4	1.93	None
Mated spermatheca	5 ± 2	0 of 4	1.58	None
Adult carcass	12 ± 1	1 of 4	3.50	Up
Larval CNS	4 ± 3	0 of 4	1.17	None
Larval Salivary gland	16 ± 3	1 of 4	4.77	Up
Larval midgut	5 ± 2	0 of 4	1.59	None
Larval tubule	8 ± 1	0 of 4	2.50	Up
Larval hindgut	7 ± 1	0 of 4	2.11	None
Larval fat body	48 ± 8	4 of 4	13.70	Up
Larval trachea	22 ± 8	0 of 4	6.39	Up
Larval carcass	4 ± 1	0 of 4	1.21	None
S2 cells (growing)	14 ± 0	0 of 4	4.26	Up
Whole fly	3 ± 1	0 of 4

():

Annotation Number : CG7981
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261451
Gbrowse : chrX:2374590-2399583 (-) // 100.0 //
Probeset : 1640223_a_at
Accessions : protein= NP_001027033; /// NP_001027034; /// NP_001027035; /// NP_001027036; /// NP_001027037; /// NP_001027038; /// NP_001096869; /// NP_001162648;, nucleotide= NM_001031862; /// NM_001031863; /// NM_001031864; /// NM_001031865; /// NM_001031866; /// NM_001031867; /// NM_001103399; /// NM_001169177;
Pathway : 0031012 // extracellular matrix // inferred from electronic annotation
FlyMine data for FBgn0261451.
BioGrid reports that CG7981 interacts with CG2328 CG2328 CG3938 CG3938 CG4654 CG6376 CG2328 CG2328 .
TRiP has 3 RNAi stocks for FBgn0261451 available for purchase.
VDRC has 3 RNAi stocks for FBgn0261451 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	108 ± 2	4 of 4	2.40	Up
Head	58 ± 2	4 of 4	1.30	Up
Eye	54 ± 5	4 of 4	1.20	None
Thoracicoabdominal ganglion	249 ± 14	4 of 4	5.50	Up
Salivary gland	748 ± 17	4 of 4	16.38	Up
Crop	83 ± 2	4 of 4	1.80	Up
Midgut	102 ± 4	4 of 4	2.20	Up
Tubule	182 ± 55	4 of 4	4.00	Up
Hindgut	185 ± 4	4 of 4	4.10	Up
Heart	49 ± 8	4 of 4	1.07	None
Fat body	24 ± 9	3 of 4	0.53	Down
Ovary	20 ± 1	4 of 4	0.50	Down
Testis	33 ± 3	4 of 4	0.70	Down
Male accessory glands	44 ± 2	4 of 4	1.00	None
Virgin spermatheca	29 ± 2	2 of 4	0.64	Down
Mated spermatheca	44 ± 3	4 of 4	0.98	None
Adult carcass	61 ± 4	4 of 4	1.30	Up
Larval CNS	158 ± 32	4 of 4	3.47	Up
Larval Salivary gland	104 ± 5	4 of 4	2.28	Up
Larval midgut	216 ± 18	4 of 4	4.74	Up
Larval tubule	230 ± 10	4 of 4	5.00	Up
Larval hindgut	123 ± 10	4 of 4	2.70	Up
Larval fat body	2188 ± 249	4 of 4	47.90	Up
Larval trachea	300 ± 58	4 of 4	6.56	Up
Larval carcass	62 ± 6	4 of 4	1.37	None
S2 cells (growing)	87 ± 6	4 of 4	1.92	Up
Whole fly	45 ± 3	4 of 4

Looking for FBgn0261451. 5 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720