Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261458 through 18771 annotations produced 2 hits



():

Annotation Number : CG5074
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261458
Gbrowse : chr2L:1154150-1156284 (-) // 100.0 //
Probeset : 1627066_at
Accessions : protein= NP_001033869; /// NP_001033870;, nucleotide= NM_001038780; /// NM_001038781;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annot
FlyMine data for FBgn0261458.
TRiP has 1 RNAi stocks for FBgn0261458 available for purchase.
VDRC has 3 RNAi stocks for FBgn0261458 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 34 of 4 6.00Up
Head12 13 of 4 1.40None
Eye3 11 of 4 0.36Down
Thoracicoabdominal ganglion38 84 of 4 4.30Up
Salivary gland29 32 of 4 3.35Up
Crop10 24 of 4 1.20None
Midgut16 04 of 4 1.90Up
Tubule9 11 of 4 1.00None
Hindgut8 13 of 4 0.90None
Heart2 00 of 4 0.32Down
Fat body12 43 of 4 1.46None
Ovary3 00 of 4 0.40Down
Testis4 11 of 4 0.60None
Male accessory glands10 10 of 4 1.20None
Virgin spermatheca7 10 of 4 0.82None
Mated spermatheca6 20 of 4 0.69None
Adult carcass8 30 of 4 1.00None
Larval CNS11 44 of 4 1.29None
Larval Salivary gland9 11 of 4 1.09None
Larval midgut14 14 of 4 1.67Up
Larval tubule8 22 of 4 1.00None
Larval hindgut8 12 of 4 0.96None
Larval fat body9 21 of 4 1.10None
Larval trachea8 42 of 4 0.97None
Larval carcass7 11 of 4 0.87None
S2 cells (growing)8 03 of 4 1.01None
Whole fly8 14 of 4



():

Annotation Number : CG5061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261458
Gbrowse : chr2L:1151677-1158264 (-) // 100.0 //
Probeset : 1629012_at
Accessions : protein= NP_001033869; /// NP_001033870;, nucleotide= NM_001038780; /// NM_001038781;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annot
FlyMine data for FBgn0261458.
BioGrid reports that CG5061 interacts with CG8173 CG3263 CG8355 CG5481 CG13521 .
TRiP has 1 RNAi stocks for FBgn0261458 available for purchase.
VDRC has 3 RNAi stocks for FBgn0261458 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain483 64 of 4 0.80Down
Head340 134 of 4 0.60Down
Eye213 94 of 4 0.37Down
Thoracicoabdominal ganglion561 74 of 4 1.00None
Salivary gland900 334 of 4 1.56Up
Crop1371 414 of 4 2.40Up
Midgut1025 134 of 4 1.80Up
Tubule914 564 of 4 1.60Up
Hindgut768 134 of 4 1.30Up
Heart579 214 of 4 1.01None
Fat body136 164 of 4 0.24Down
Ovary737 34 of 4 1.30Up
Testis199 24 of 4 0.30Down
Male accessory glands543 204 of 4 0.90None
Virgin spermatheca264 84 of 4 0.46Down
Mated spermatheca337 354 of 4 0.59Down
Adult carcass390 144 of 4 0.70Down
Larval CNS1200 264 of 4 2.09Up
Larval Salivary gland1976 534 of 4 3.43Up
Larval midgut1734 744 of 4 3.01Up
Larval tubule1030 144 of 4 1.80Up
Larval hindgut1618 404 of 4 2.81Up
Larval fat body357 294 of 4 0.60Down
Larval trachea1126 844 of 4 1.96Up
Larval carcass1619 404 of 4 2.81Up
S2 cells (growing)2090 144 of 4 3.63Up
Whole fly575 154 of 4

Looking for FBgn0261458. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime