FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261458 through 18771 annotations produced 2 hits

():

Annotation Number : CG5074
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261458
Gbrowse : chr2L:1154150-1156284 (-) // 100.0 //
Probeset : 1627066_at
Accessions : protein= NP_001033869; /// NP_001033870;, nucleotide= NM_001038780; /// NM_001038781;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annot
FlyMine data for FBgn0261458.
TRiP has 1 RNAi stocks for FBgn0261458 available for purchase.
VDRC has 3 RNAi stocks for FBgn0261458 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	53 ± 3	4 of 4	6.00	Up
Head	12 ± 1	3 of 4	1.40	None
Eye	3 ± 1	1 of 4	0.36	Down
Thoracicoabdominal ganglion	38 ± 8	4 of 4	4.30	Up
Salivary gland	29 ± 3	2 of 4	3.35	Up
Crop	10 ± 2	4 of 4	1.20	None
Midgut	16 ± 0	4 of 4	1.90	Up
Tubule	9 ± 1	1 of 4	1.00	None
Hindgut	8 ± 1	3 of 4	0.90	None
Heart	2 ± 0	0 of 4	0.32	Down
Fat body	12 ± 4	3 of 4	1.46	None
Ovary	3 ± 0	0 of 4	0.40	Down
Testis	4 ± 1	1 of 4	0.60	None
Male accessory glands	10 ± 1	0 of 4	1.20	None
Virgin spermatheca	7 ± 1	0 of 4	0.82	None
Mated spermatheca	6 ± 2	0 of 4	0.69	None
Adult carcass	8 ± 3	0 of 4	1.00	None
Larval CNS	11 ± 4	4 of 4	1.29	None
Larval Salivary gland	9 ± 1	1 of 4	1.09	None
Larval midgut	14 ± 1	4 of 4	1.67	Up
Larval tubule	8 ± 2	2 of 4	1.00	None
Larval hindgut	8 ± 1	2 of 4	0.96	None
Larval fat body	9 ± 2	1 of 4	1.10	None
Larval trachea	8 ± 4	2 of 4	0.97	None
Larval carcass	7 ± 1	1 of 4	0.87	None
S2 cells (growing)	8 ± 0	3 of 4	1.01	None
Whole fly	8 ± 1	4 of 4

():

Annotation Number : CG5061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261458
Gbrowse : chr2L:1151677-1158264 (-) // 100.0 //
Probeset : 1629012_at
Accessions : protein= NP_001033869; /// NP_001033870;, nucleotide= NM_001038780; /// NM_001038781;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0003779 // actin binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annot
FlyMine data for FBgn0261458.
BioGrid reports that CG5061 interacts with CG8173 CG3263 CG8355 CG5481 CG13521 .
TRiP has 1 RNAi stocks for FBgn0261458 available for purchase.
VDRC has 3 RNAi stocks for FBgn0261458 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	483 ± 6	4 of 4	0.80	Down
Head	340 ± 13	4 of 4	0.60	Down
Eye	213 ± 9	4 of 4	0.37	Down
Thoracicoabdominal ganglion	561 ± 7	4 of 4	1.00	None
Salivary gland	900 ± 33	4 of 4	1.56	Up
Crop	1371 ± 41	4 of 4	2.40	Up
Midgut	1025 ± 13	4 of 4	1.80	Up
Tubule	914 ± 56	4 of 4	1.60	Up
Hindgut	768 ± 13	4 of 4	1.30	Up
Heart	579 ± 21	4 of 4	1.01	None
Fat body	136 ± 16	4 of 4	0.24	Down
Ovary	737 ± 3	4 of 4	1.30	Up
Testis	199 ± 2	4 of 4	0.30	Down
Male accessory glands	543 ± 20	4 of 4	0.90	None
Virgin spermatheca	264 ± 8	4 of 4	0.46	Down
Mated spermatheca	337 ± 35	4 of 4	0.59	Down
Adult carcass	390 ± 14	4 of 4	0.70	Down
Larval CNS	1200 ± 26	4 of 4	2.09	Up
Larval Salivary gland	1976 ± 53	4 of 4	3.43	Up
Larval midgut	1734 ± 74	4 of 4	3.01	Up
Larval tubule	1030 ± 14	4 of 4	1.80	Up
Larval hindgut	1618 ± 40	4 of 4	2.81	Up
Larval fat body	357 ± 29	4 of 4	0.60	Down
Larval trachea	1126 ± 84	4 of 4	1.96	Up
Larval carcass	1619 ± 40	4 of 4	2.81	Up
S2 cells (growing)	2090 ± 14	4 of 4	3.63	Up
Whole fly	575 ± 15	4 of 4

Looking for FBgn0261458. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720