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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261479 through 18771 annotations produced 1 hits



():

Annotation Number : CG2245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261479
Gbrowse : chr3R:27572166-27573251 (-) // 100.0 //
Probeset : 1628764_at
Accessions : protein= NP_651887;, nucleotide= NM_143630;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005488 // binding // inferred from electro
FlyMine data for FBgn0261479.
VDRC has 3 RNAi stocks for FBgn0261479 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 ± 14 of 4 0.40Down
Head116 ± 14 of 4 0.50Down
Eye131 ± 44 of 4 0.52Down
Thoracicoabdominal ganglion91 ± 44 of 4 0.40Down
Salivary gland239 ± 154 of 4 0.94None
Crop139 ± 34 of 4 0.60Down
Midgut229 ± 104 of 4 0.90None
Tubule192 ± 174 of 4 0.80Down
Hindgut143 ± 34 of 4 0.60Down
Heart181 ± 124 of 4 0.71Down
Fat body144 ± 24 of 4 0.57Down
Ovary426 ± 94 of 4 1.70Up
Testis312 ± 94 of 4 1.20Up
Male accessory glands305 ± 164 of 4 1.20None
Virgin spermatheca119 ± 64 of 4 0.47Down
Mated spermatheca129 ± 34 of 4 0.51Down
Adult carcass141 ± 54 of 4 0.60Down
Larval CNS179 ± 134 of 4 0.71Down
Larval Salivary gland311 ± 64 of 4 1.23Up
Larval midgut252 ± 274 of 4 0.99None
Larval tubule165 ± 94 of 4 0.70Down
Larval hindgut162 ± 104 of 4 0.64Down
Larval fat body100 ± 84 of 4 0.40Down
Larval trachea228 ± 354 of 4 0.90None
Larval carcass195 ± 324 of 4 0.77None
S2 cells (growing)267 ± 124 of 4 1.05None
Whole fly254 ± 134 of 4

Looking for FBgn0261479. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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