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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261524 through 18771 annotations produced 1 hits



():

Annotation Number : CG12244
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261524
Gbrowse : chrX:12985155-12988026 (+) // 100.0 //
Probeset : 1633665_at
Accessions : protein= NP_477162;, nucleotide= NM_057814;
Interpro : 0004672 // protein kinase activity // inferred from direct assay /// 0004672 // protein kinase activity // inferred from
FlyMine data for FBgn0261524.
Homophila reports that CG12244 is a close match (9e-11) to human gene LYK5;PMSE (NP_699166), a gene associated with Polyhydramnios, megalencephaly, and symptomatic epilepsy, 611087 (3).
BioGrid reports that CG12244 interacts with CG2699 CG6660 CG8725 .
TRiP has 2 RNAi stocks for FBgn0261524 available for purchase.
VDRC has 2 RNAi stocks for FBgn0261524 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 ± 44 of 4 0.60Down
Head104 ± 74 of 4 0.60Down
Eye72 ± 44 of 4 0.39Down
Thoracicoabdominal ganglion113 ± 14 of 4 0.60Down
Salivary gland150 ± 94 of 4 0.80Down
Crop119 ± 64 of 4 0.60Down
Midgut103 ± 64 of 4 0.60Down
Tubule138 ± 64 of 4 0.70Down
Hindgut116 ± 44 of 4 0.60Down
Heart106 ± 54 of 4 0.57Down
Fat body147 ± 314 of 4 0.78None
Ovary324 ± 84 of 4 1.70Up
Testis29 ± 14 of 4 0.20Down
Male accessory glands111 ± 54 of 4 0.60Down
Virgin spermatheca167 ± 84 of 4 0.89None
Mated spermatheca158 ± 94 of 4 0.84None
Adult carcass97 ± 44 of 4 0.50Down
Larval CNS108 ± 134 of 4 0.58Down
Larval Salivary gland175 ± 104 of 4 0.93None
Larval midgut105 ± 44 of 4 0.56Down
Larval tubule168 ± 74 of 4 0.90None
Larval hindgut145 ± 74 of 4 0.77Down
Larval fat body100 ± 134 of 4 0.50Down
Larval trachea107 ± 84 of 4 0.57Down
Larval carcass123 ± 34 of 4 0.65Down
S2 cells (growing)177 ± 34 of 4 0.94None
Whole fly188 ± 94 of 4

Looking for FBgn0261524. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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