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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261534 through 18771 annotations produced 1 hits



():

Annotation Number : CG7532
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261534
Gbrowse : chr2L:14349111-14351510 (-) // 99.39 //
Probeset : 1635161_at
Accessions : protein= NP_609710;, nucleotide= NM_135866;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // inferred f
FlyMine data for FBgn0261534.
VDRC has 2 RNAi stocks for FBgn0261534 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 10 of 4 0.10Down
Head225 364 of 4 1.90None
Eye64 94 of 4 0.53Down
Thoracicoabdominal ganglion16 31 of 4 0.10Down
Salivary gland11 30 of 4 0.10Down
Crop12 01 of 4 0.10Down
Midgut16 10 of 4 0.10Down
Tubule9 10 of 4 0.10Down
Hindgut31 24 of 4 0.30Down
Heart51 164 of 4 0.43Down
Fat body46 84 of 4 0.38Down
Ovary7 00 of 4 0.10Down
Testis17 04 of 4 0.10Down
Male accessory glands21 61 of 4 0.20Down
Virgin spermatheca9 20 of 4 0.08Down
Mated spermatheca14 40 of 4 0.12Down
Adult carcass608 614 of 4 5.00Up
Larval CNS15 13 of 4 0.13Down
Larval Salivary gland12 20 of 4 0.10Down
Larval midgut14 00 of 4 0.12Down
Larval tubule9 10 of 4 0.10Down
Larval hindgut271 114 of 4 2.24Up
Larval fat body12 20 of 4 0.10Down
Larval trachea2960 2044 of 424.45Up
Larval carcass1530 2034 of 412.64Up
S2 cells (growing)12 10 of 4 0.10Down
Whole fly121 184 of 4

Looking for FBgn0261534. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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