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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261538 through 18771 annotations produced 2 hits



(CG30080):

Annotation Number : CG30080
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050080 /// FBgn0261538
Gbrowse : chr2R:11586223-11589199 (-) // 100.0 //
Probeset : 1627759_at
Accessions : protein= NP_725491;, nucleotide= NM_166115;
Pathway : DNA-dependent // inferred from electronic annotation"
FlyMine data for FBgn0050080 /// FBgn0261538.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head63 ± 44 of 4 3.70Up
Eye60 ± 34 of 4 3.52Up
Thoracicoabdominal ganglion3 ± 10 of 4 0.20Down
Salivary gland9 ± 30 of 4 0.54None
Crop65 ± 124 of 4 3.80Up
Midgut3 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.20Down
Hindgut15 ± 11 of 4 0.90None
Heart6 ± 10 of 4 0.38Down
Fat body8 ± 60 of 4 0.47None
Ovary0 ± 00 of 4 0.00Down
Testis279 ± 124 of 416.30Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca27 ± 24 of 4 1.58Up
Mated spermatheca24 ± 44 of 4 1.45None
Adult carcass66 ± 44 of 4 3.90Up
Larval CNS6 ± 12 of 4 0.37Down
Larval Salivary gland97 ± 114 of 4 5.68Up
Larval midgut12 ± 42 of 4 0.73None
Larval tubule6 ± 10 of 4 0.40Down
Larval hindgut34 ± 34 of 4 2.02Up
Larval fat body50 ± 54 of 4 3.00Up
Larval trachea1432 ± 2114 of 483.80Up
Larval carcass398 ± 484 of 423.30Up
S2 cells (growing)1 ± 00 of 4 0.08Down
Whole fly17 ± 24 of 4



(CG30080):

Annotation Number : CT32157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050080 /// FBgn0261538
Gbrowse : chr2R:11586520-11586658 (-) // 100.0 //
Probeset : 1628387_s_at
Accessions : protein= NP_725491;, nucleotide= NM_166115;
Pathway : DNA-dependent // inferred from electronic annotation"
FlyMine data for FBgn0050080 /// FBgn0261538.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 22 of 4 0.30Down
Head101 ± 74 of 4 2.70Up
Eye84 ± 84 of 4 2.20Up
Thoracicoabdominal ganglion18 ± 12 of 4 0.50Down
Salivary gland23 ± 31 of 4 0.62Down
Crop111 ± 144 of 4 2.90Up
Midgut12 ± 00 of 4 0.30Down
Tubule14 ± 01 of 4 0.40Down
Hindgut34 ± 14 of 4 0.90None
Heart8 ± 22 of 4 0.23Down
Fat body30 ± 64 of 4 0.79None
Ovary5 ± 10 of 4 0.10Down
Testis229 ± 214 of 4 6.00Up
Male accessory glands13 ± 40 of 4 0.40Down
Virgin spermatheca34 ± 34 of 4 0.91None
Mated spermatheca38 ± 64 of 4 1.01None
Adult carcass91 ± 134 of 4 2.40Up
Larval CNS18 ± 44 of 4 0.47Down
Larval Salivary gland151 ± 184 of 4 3.95Up
Larval midgut35 ± 103 of 4 0.93None
Larval tubule25 ± 43 of 4 0.70None
Larval hindgut64 ± 44 of 4 1.70Up
Larval fat body85 ± 114 of 4 2.20Up
Larval trachea1965 ± 2924 of 451.42Up
Larval carcass471 ± 354 of 412.33Up
S2 cells (growing)13 ± 23 of 4 0.35Down
Whole fly38 ± 34 of 4

Looking for FBgn0261538. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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