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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261545 through 18771 annotations produced 1 hits



():

Annotation Number : CG12488
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261545
Gbrowse : chr2R:8635944-8638139 (+) // 100.0 //
Probeset : 1635573_at
Accessions : protein= NP_610816;, nucleotide= NM_136972;
FlyMine data for FBgn0261545.
VDRC has 4 RNAi stocks for FBgn0261545 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 12 of 4 3.00Up
Head13 40 of 4 1.50None
Eye13 22 of 4 1.52None
Thoracicoabdominal ganglion33 24 of 4 3.60Up
Salivary gland21 80 of 4 2.34None
Crop16 10 of 4 1.80Up
Midgut19 10 of 4 2.20Up
Tubule3 00 of 4 0.30Down
Hindgut22 22 of 4 2.50Up
Heart6 00 of 4 0.72None
Fat body9 50 of 4 1.06None
Ovary7 10 of 4 0.90None
Testis9 10 of 4 1.10None
Male accessory glands31 51 of 4 3.40Up
Virgin spermatheca3 10 of 4 0.41None
Mated spermatheca6 20 of 4 0.76None
Adult carcass8 20 of 4 1.00None
Larval CNS43 64 of 4 4.83Up
Larval Salivary gland19 11 of 4 2.13Up
Larval midgut10 20 of 4 1.16None
Larval tubule24 32 of 4 2.70Up
Larval hindgut37 74 of 4 4.07Up
Larval fat body58 94 of 4 6.40Up
Larval trachea13 13 of 4 1.51None
Larval carcass10 10 of 4 1.18None
S2 cells (growing)81 14 of 4 8.99Up
Whole fly9 10 of 4

Looking for FBgn0261545. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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