FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261547 through 18771 annotations produced 2 hits

():

Annotation Number : CG3799
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261547
Gbrowse : chr3L:16979734-16987501 (+) // 100.0 //
Probeset : 1628915_s_at
Accessions : protein= NP_648942; /// NP_730228; /// NP_730229;, nucleotide= NM_140685; /// NM_168705; /// NM_168706;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from d
Interpro : 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation
FlyMine data for FBgn0261547.
BioGrid reports that CG3799 interacts with CG5792 .
TRiP has 1 RNAi stocks for FBgn0261547 available for purchase.
VDRC has 5 RNAi stocks for FBgn0261547 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	167 ± 6	4 of 4	2.30	Up
Head	185 ± 9	4 of 4	2.50	Up
Eye	468 ± 39	4 of 4	6.35	Up
Thoracicoabdominal ganglion	159 ± 2	4 of 4	2.20	Up
Salivary gland	180 ± 19	4 of 4	2.45	Up
Crop	139 ± 5	4 of 4	1.90	Up
Midgut	56 ± 5	4 of 4	0.80	None
Tubule	360 ± 68	4 of 4	4.90	Up
Hindgut	87 ± 2	4 of 4	1.20	None
Heart	77 ± 6	4 of 4	1.05	None
Fat body	66 ± 7	3 of 4	0.90	None
Ovary	61 ± 5	4 of 4	0.80	None
Testis	26 ± 2	4 of 4	0.40	Down
Male accessory glands	160 ± 2	4 of 4	2.20	Up
Virgin spermatheca	111 ± 7	4 of 4	1.51	Up
Mated spermatheca	60 ± 6	4 of 4	0.82	None
Adult carcass	131 ± 5	4 of 4	1.80	Up
Larval CNS	48 ± 4	4 of 4	0.65	Down
Larval Salivary gland	115 ± 5	4 of 4	1.56	Up
Larval midgut	68 ± 4	1 of 4	0.92	None
Larval tubule	152 ± 11	4 of 4	2.10	Up
Larval hindgut	101 ± 6	4 of 4	1.38	Up
Larval fat body	80 ± 10	4 of 4	1.10	None
Larval trachea	170 ± 23	4 of 4	2.31	Up
Larval carcass	115 ± 4	4 of 4	1.56	Up
S2 cells (growing)	72 ± 2	4 of 4	0.98	None
Whole fly	73 ± 7	4 of 4

():

Annotation Number : CG14060
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261547
Gbrowse : chr3L:16973786-16976966 (+) // 100.0 //
Probeset : 1632154_at
Accessions : protein= NP_001097630;, nucleotide= NM_001104160;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0031594 // neuromuscular junction // inferred from d
Interpro : 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation
FlyMine data for FBgn0261547.
TRiP has 1 RNAi stocks for FBgn0261547 available for purchase.
VDRC has 5 RNAi stocks for FBgn0261547 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.30	None
Head	6 ± 1	0 of 4	1.50	None
Eye	6 ± 1	0 of 4	1.37	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.20	None
Salivary gland	2 ± 0	0 of 4	0.45	None
Crop	4 ± 1	0 of 4	1.00	None
Midgut	1 ± 0	0 of 4	0.20	None
Tubule	16 ± 4	0 of 4	3.70	Up
Hindgut	2 ± 1	0 of 4	0.50	None
Heart	1 ± 0	0 of 4	0.35	None
Fat body	11 ± 4	0 of 4	2.49	Up
Ovary	3 ± 1	0 of 4	0.70	None
Testis	0 ± 0	0 of 4	0.20	Down
Male accessory glands	22 ± 1	0 of 4	5.10	Up
Virgin spermatheca	8 ± 0	0 of 4	1.90	Up
Mated spermatheca	3 ± 1	0 of 4	0.76	None
Adult carcass	7 ± 2	0 of 4	1.60	None
Larval CNS	5 ± 1	0 of 4	1.27	None
Larval Salivary gland	3 ± 1	0 of 4	0.86	None
Larval midgut	1 ± 0	0 of 4	0.29	None
Larval tubule	12 ± 3	0 of 4	2.80	None
Larval hindgut	1 ± 0	0 of 4	0.40	None
Larval fat body	1 ± 0	0 of 4	0.20	None
Larval trachea	2 ± 1	0 of 4	0.58	None
Larval carcass	1 ± 0	0 of 4	0.38	None
S2 cells (growing)	14 ± 1	0 of 4	3.18	Up
Whole fly	4 ± 1	0 of 4

Looking for FBgn0261547. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720