FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261549 through 18771 annotations produced 3 hits

():

Annotation Number : CG15352
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261549
Gbrowse : chrX:8801747-8802358 (+) // 100.0 //
Probeset : 1635851_at
Accessions : protein= NP_652537;, nucleotide= NM_144280;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay /// 0016020 // membrane // inferred from electro
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004143 // diacylglycerol kinase activity // in
FlyMine data for FBgn0261549.
BioGrid reports that CG15352 interacts with CG17019 CG32171 CG3792 CG4867 CG7001 .
TRiP has 1 RNAi stocks for FBgn0261549 available for purchase.
VDRC has 8 RNAi stocks for FBgn0261549 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	23 ± 1	4 of 4	2.10	Up
Head	15 ± 2	2 of 4	1.40	None
Eye	27 ± 1	4 of 4	2.51	Up
Thoracicoabdominal ganglion	22 ± 1	4 of 4	2.00	Up
Salivary gland	34 ± 5	0 of 4	3.10	Up
Crop	65 ± 3	4 of 4	5.90	Up
Midgut	22 ± 2	3 of 4	2.00	Up
Tubule	46 ± 1	4 of 4	4.20	Up
Hindgut	56 ± 1	4 of 4	5.10	Up
Heart	19 ± 1	4 of 4	1.78	Up
Fat body	26 ± 5	3 of 4	2.34	Up
Ovary	16 ± 1	4 of 4	1.40	Up
Testis	7 ± 1	1 of 4	0.60	None
Male accessory glands	40 ± 2	0 of 4	3.60	Up
Virgin spermatheca	25 ± 3	4 of 4	2.31	Up
Mated spermatheca	32 ± 2	4 of 4	2.91	Up
Adult carcass	41 ± 4	4 of 4	3.80	Up
Larval CNS	23 ± 2	4 of 4	2.07	Up
Larval Salivary gland	19 ± 4	0 of 4	1.73	None
Larval midgut	17 ± 1	0 of 4	1.57	Up
Larval tubule	22 ± 2	4 of 4	2.00	Up
Larval hindgut	24 ± 1	4 of 4	2.15	Up
Larval fat body	13 ± 3	0 of 4	1.20	None
Larval trachea	56 ± 7	4 of 4	5.06	Up
Larval carcass	38 ± 4	4 of 4	3.49	Up
S2 cells (growing)	19 ± 0	4 of 4	1.79	Up
Whole fly	11 ± 1	0 of 4

():

Annotation Number : CG10966
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261549
Gbrowse : chrX:8819216-8918978 (+) // 99.84 //
Probeset : 1641349_at
Accessions : protein= NP_001096916; /// NP_001096917; /// NP_511092;, nucleotide= NM_001103446; /// NM_001103447; /// NM_078537;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay /// 0016020 // membrane // inferred from electro
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004143 // diacylglycerol kinase activity // in
FlyMine data for FBgn0261549.
BioGrid reports that CG10966 interacts with CG17759 CG3620 CG7875 CG18345 CG2199 .
TRiP has 1 RNAi stocks for FBgn0261549 available for purchase.
VDRC has 8 RNAi stocks for FBgn0261549 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	70 ± 3	4 of 4	6.60	Up
Head	39 ± 6	2 of 4	3.70	Up
Eye	735 ± 106	4 of 4	69.06	Up
Thoracicoabdominal ganglion	43 ± 3	4 of 4	4.10	Up
Salivary gland	9 ± 4	0 of 4	0.93	None
Crop	21 ± 1	2 of 4	2.10	Up
Midgut	3 ± 0	0 of 4	0.30	Down
Tubule	45 ± 2	3 of 4	4.30	Up
Hindgut	11 ± 2	1 of 4	1.10	None
Heart	39 ± 4	4 of 4	3.69	Up
Fat body	9 ± 5	0 of 4	0.92	None
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	2 ± 1	0 of 4	0.20	Down
Male accessory glands	16 ± 2	0 of 4	1.60	None
Virgin spermatheca	19 ± 2	4 of 4	1.82	Up
Mated spermatheca	19 ± 2	3 of 4	1.80	Up
Adult carcass	21 ± 3	1 of 4	2.00	Up
Larval CNS	22 ± 2	4 of 4	2.11	Up
Larval Salivary gland	4 ± 2	0 of 4	0.43	None
Larval midgut	7 ± 1	0 of 4	0.74	None
Larval tubule	28 ± 2	4 of 4	2.70	Up
Larval hindgut	9 ± 2	0 of 4	0.86	None
Larval fat body	1 ± 0	0 of 4	0.20	Down
Larval trachea	60 ± 20	4 of 4	5.70	Up
Larval carcass	27 ± 1	4 of 4	2.55	Up
S2 cells (growing)	10 ± 1	1 of 4	1.00	None
Whole fly	10 ± 1	0 of 4

():

Annotation Number : CG12660
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261549
Gbrowse : chrX:8806400-8806981 (+) // 100.0 //
Probeset : 1628730_at
Accessions : protein= NP_001096916; /// NP_001096917; /// NP_511092;, nucleotide= NM_001103446; /// NM_001103447; /// NM_078537;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay /// 0016020 // membrane // inferred from electro
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004143 // diacylglycerol kinase activity // in
FlyMine data for FBgn0261549.
TRiP has 1 RNAi stocks for FBgn0261549 available for purchase.
VDRC has 8 RNAi stocks for FBgn0261549 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 0	2 of 4	1.30	None
Head	36 ± 2	4 of 4	4.60	Up
Eye	349 ± 76	4 of 4	44.19	Up
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.10	Down
Salivary gland	12 ± 2	0 of 4	1.63	None
Crop	11 ± 1	2 of 4	1.50	None
Midgut	1 ± 0	0 of 4	0.20	Down
Tubule	9 ± 0	1 of 4	1.20	Up
Hindgut	7 ± 1	0 of 4	0.90	None
Heart	3 ± 0	0 of 4	0.39	Down
Fat body	4 ± 3	1 of 4	0.58	None
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	1 ± 0	0 of 4	0.20	Down
Male accessory glands	6 ± 2	0 of 4	0.80	None
Virgin spermatheca	14 ± 2	3 of 4	1.77	None
Mated spermatheca	14 ± 2	3 of 4	1.82	None
Adult carcass	2 ± 0	0 of 4	0.30	Down
Larval CNS	2 ± 1	0 of 4	0.29	Down
Larval Salivary gland	0 ± 0	0 of 4	0.09	Down
Larval midgut	1 ± 0	0 of 4	0.15	Down
Larval tubule	2 ± 1	0 of 4	0.30	Down
Larval hindgut	1 ± 0	0 of 4	0.14	Down
Larval fat body	3 ± 2	0 of 4	0.40	None
Larval trachea	13 ± 13	1 of 4	1.65	None
Larval carcass	1 ± 0	0 of 4	0.21	Down
S2 cells (growing)	1 ± 0	0 of 4	0.23	Down
Whole fly	7 ± 1	1 of 4

Looking for FBgn0261549. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720