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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261553 through 18771 annotations produced 1 hits



():

Annotation Number : CG18490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261553
Gbrowse : chr3L:11207599-11220891 (+) // 100.0 //
Probeset : 1634980_s_at
Accessions : protein= NP_648454; /// NP_729690;, nucleotide= NM_140197; /// NM_168453;
FlyMine data for FBgn0261553.
TRiP has 1 RNAi stocks for FBgn0261553 available for purchase.
VDRC has 4 RNAi stocks for FBgn0261553 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain109 44 of 4 1.30Up
Head59 34 of 4 0.70Down
Eye123 74 of 4 1.51Up
Thoracicoabdominal ganglion167 124 of 4 2.10Up
Salivary gland114 294 of 4 1.39None
Crop218 134 of 4 2.70Up
Midgut85 54 of 4 1.00None
Tubule115 94 of 4 1.40Up
Hindgut132 54 of 4 1.60Up
Heart184 34 of 4 2.25Up
Fat body45 83 of 4 0.55Down
Ovary77 24 of 4 1.00None
Testis44 44 of 4 0.50Down
Male accessory glands43 23 of 4 0.50Down
Virgin spermatheca28 24 of 4 0.35Down
Mated spermatheca42 24 of 4 0.52Down
Adult carcass140 254 of 4 1.70None
Larval CNS39 54 of 4 0.48Down
Larval Salivary gland65 44 of 4 0.80None
Larval midgut159 64 of 4 1.95Up
Larval tubule127 44 of 4 1.60Up
Larval hindgut206 204 of 4 2.52Up
Larval fat body40 34 of 4 0.50Down
Larval trachea166 324 of 4 2.03Up
Larval carcass110 64 of 4 1.35Up
S2 cells (growing)67 64 of 4 0.83None
Whole fly81 54 of 4

Looking for FBgn0261553. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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