FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261554 through 18771 annotations produced 2 hits

():

Annotation Number : CG30387
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261554
Gbrowse : chr2R:17183177-17197910 (+) // 100.0 //
Probeset : 1629408_s_at
Accessions : protein= NP_001137722; /// NP_001137723; /// NP_001137724; /// NP_001137725; /// NP_001137726; /// NP_001163233; /// NP_611574; /// NP_726059; /// NP_726060;, nucleotide= NM_001144250; /// NM_001144251; /// NM_001144252; /// NM_001144253; /// NM_001144254; /// NM_001169762; /// NM_137730; /// NM_166441; /// NM_166442;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0261554.
Homophila reports that CG30387 is a close match (1e-14) to human gene RFXANK (NP_003712), a gene associated with MHC class II deficiency, complementation group B, 209920 (3).
BioGrid reports that CG30387 interacts with CG5499 CG6464 .
TRiP has 1 RNAi stocks for FBgn0261554 available for purchase.
VDRC has 7 RNAi stocks for FBgn0261554 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	188 ± 6	4 of 4	1.00	None
Head	256 ± 25	4 of 4	1.40	None
Eye	157 ± 16	4 of 4	0.85	None
Thoracicoabdominal ganglion	292 ± 9	4 of 4	1.60	Up
Salivary gland	607 ± 31	4 of 4	3.26	Up
Crop	306 ± 9	4 of 4	1.60	Up
Midgut	123 ± 2	4 of 4	0.70	Down
Tubule	645 ± 37	4 of 4	3.50	Up
Hindgut	489 ± 8	4 of 4	2.60	Up
Heart	337 ± 21	4 of 4	1.81	Up
Fat body	554 ± 51	4 of 4	2.98	Up
Ovary	277 ± 7	4 of 4	1.50	Up
Testis	27 ± 0	4 of 4	0.10	Down
Male accessory glands	139 ± 4	4 of 4	0.70	Down
Virgin spermatheca	595 ± 13	4 of 4	3.20	Up
Mated spermatheca	436 ± 2	4 of 4	2.35	Up
Adult carcass	358 ± 21	4 of 4	1.90	Up
Larval CNS	107 ± 17	4 of 4	0.58	Down
Larval Salivary gland	195 ± 12	4 of 4	1.05	None
Larval midgut	103 ± 4	4 of 4	0.56	Down
Larval tubule	437 ± 10	4 of 4	2.30	Up
Larval hindgut	1022 ± 32	4 of 4	5.49	Up
Larval fat body	84 ± 8	4 of 4	0.50	Down
Larval trachea	115 ± 4	4 of 4	0.62	Down
Larval carcass	166 ± 10	4 of 4	0.89	None
S2 cells (growing)	57 ± 2	4 of 4	0.31	Down
Whole fly	186 ± 9	4 of 4

():

Annotation Number : CG30386
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261554
Gbrowse : chr2R:17187408-17187978 (+) // 100.0 //
Probeset : 1625200_at
Accessions : protein= NP_726057;, nucleotide= NM_166440;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0261554.
TRiP has 1 RNAi stocks for FBgn0261554 available for purchase.
VDRC has 7 RNAi stocks for FBgn0261554 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	0.90	None
Head	3 ± 0	0 of 4	0.70	None
Eye	3 ± 0	1 of 4	0.73	None
Thoracicoabdominal ganglion	7 ± 1	2 of 4	1.70	None
Salivary gland	9 ± 3	0 of 4	2.05	None
Crop	9 ± 1	1 of 4	2.00	None
Midgut	7 ± 2	0 of 4	1.50	None
Tubule	27 ± 1	3 of 4	6.00	Up
Hindgut	13 ± 1	3 of 4	2.80	Up
Heart	3 ± 2	1 of 4	0.81	None
Fat body	9 ± 1	2 of 4	2.11	Up
Ovary	4 ± 0	1 of 4	1.10	None
Testis	8 ± 2	2 of 4	1.80	None
Male accessory glands	12 ± 2	1 of 4	2.70	Up
Virgin spermatheca	6 ± 1	1 of 4	1.40	None
Mated spermatheca	7 ± 0	1 of 4	1.51	None
Adult carcass	9 ± 2	0 of 4	1.90	None
Larval CNS	6 ± 0	2 of 4	1.35	None
Larval Salivary gland	9 ± 2	1 of 4	1.96	None
Larval midgut	7 ± 1	1 of 4	1.68	None
Larval tubule	22 ± 3	4 of 4	4.70	Up
Larval hindgut	7 ± 0	1 of 4	1.54	None
Larval fat body	8 ± 4	0 of 4	1.70	None
Larval trachea	2 ± 1	0 of 4	0.57	None
Larval carcass	8 ± 1	1 of 4	1.72	None
S2 cells (growing)	5 ± 1	1 of 4	1.24	None
Whole fly	4 ± 0	0 of 4

Looking for FBgn0261554. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720