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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261555 through 18771 annotations produced 2 hits



():

Annotation Number : CT33783
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261555
Gbrowse : chr3L:9546246-9546492 (+) // 100.0 //
Probeset : 1627608_s_at
Accessions : protein= NP_729509; /// NP_729510;, nucleotide= NM_168352; /// NM_168353;
FlyMine data for FBgn0261555.
TRiP has 1 RNAi stocks for FBgn0261555 available for purchase.
VDRC has 4 RNAi stocks for FBgn0261555 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 04 of 4 3.50Up
Head3 ± 00 of 4 0.80None
Eye2 ± 10 of 4 0.61None
Thoracicoabdominal ganglion9 ± 01 of 4 2.10None
Salivary gland4 ± 30 of 4 1.01None
Crop9 ± 11 of 4 2.20Up
Midgut4 ± 10 of 4 1.00None
Tubule2 ± 00 of 4 0.60Down
Hindgut2 ± 10 of 4 0.60None
Heart5 ± 10 of 4 1.15None
Fat body2 ± 20 of 4 0.60None
Ovary1 ± 00 of 4 0.40None
Testis1 ± 00 of 4 0.20None
Male accessory glands3 ± 10 of 4 0.80None
Virgin spermatheca1 ± 00 of 4 0.32None
Mated spermatheca1 ± 00 of 4 0.37None
Adult carcass3 ± 20 of 4 0.70None
Larval CNS5 ± 10 of 4 1.29None
Larval Salivary gland0 ± 00 of 4 0.14None
Larval midgut3 ± 10 of 4 0.84None
Larval tubule2 ± 10 of 4 0.50None
Larval hindgut2 ± 00 of 4 0.57None
Larval fat body2 ± 00 of 4 0.50None
Larval trachea4 ± 20 of 4 1.00None
Larval carcass1 ± 10 of 4 0.44None
S2 cells (growing)1 ± 00 of 4 0.44None
Whole fly4 ± 10 of 4



():

Annotation Number : CG32048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261555
Gbrowse : chr3L:9540319-9587609 (+) // 99.86 //
Probeset : 1638703_a_at
Accessions : protein= NP_729509; /// NP_729510;, nucleotide= NM_168352; /// NM_168353;
FlyMine data for FBgn0261555.
TRiP has 1 RNAi stocks for FBgn0261555 available for purchase.
VDRC has 4 RNAi stocks for FBgn0261555 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain234 ± 24 of 4 6.00Up
Head83 ± 44 of 4 2.10Up
Eye26 ± 34 of 4 0.67Down
Thoracicoabdominal ganglion211 ± 64 of 4 5.40Up
Salivary gland11 ± 30 of 4 0.30Down
Crop328 ± 164 of 4 8.40Up
Midgut42 ± 14 of 4 1.10None
Tubule22 ± 14 of 4 0.60Down
Hindgut96 ± 44 of 4 2.50Up
Heart75 ± 44 of 4 1.92Up
Fat body20 ± 54 of 4 0.52Down
Ovary6 ± 13 of 4 0.20Down
Testis27 ± 24 of 4 0.70Down
Male accessory glands81 ± 44 of 4 2.10Up
Virgin spermatheca43 ± 24 of 4 1.12None
Mated spermatheca55 ± 74 of 4 1.41None
Adult carcass78 ± 24 of 4 2.00Up
Larval CNS79 ± 44 of 4 2.02Up
Larval Salivary gland6 ± 11 of 4 0.15Down
Larval midgut35 ± 54 of 4 0.91None
Larval tubule7 ± 13 of 4 0.20Down
Larval hindgut77 ± 24 of 4 1.99Up
Larval fat body10 ± 11 of 4 0.30Down
Larval trachea10 ± 54 of 4 0.26Down
Larval carcass116 ± 174 of 4 2.98Up
S2 cells (growing)3 ± 00 of 4 0.09Down
Whole fly39 ± 24 of 4

Looking for FBgn0261555. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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