FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261556 through 18771 annotations produced 2 hits

():

Annotation Number : CG13811
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261556
Gbrowse : chr3L:20155458-20157270 (-) // 100.0 //
Probeset : 1626878_at
Accessions : protein= NP_001137984; /// NP_001137985; /// NP_001137986; /// NP_649182;, nucleotide= NM_001144512; /// NM_001144513; /// NM_001144514; /// NM_140925;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation
FlyMine data for FBgn0261556.
BioGrid reports that CG13811 interacts with CG3779 CG7057 CG9027 CG14476 CG14648 CG17367 CG17753 CG1836 CG2033 CG2257 CG3937 CG4258 CG6090 CG7015 CG7073 CG7434 CG1683 CG16944 .
TRiP has 2 RNAi stocks for FBgn0261556 available for purchase.
VDRC has 4 RNAi stocks for FBgn0261556 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	3 of 4	2.60	Up
Head	3 ± 0	0 of 4	1.10	None
Eye	9 ± 2	2 of 4	2.87	None
Thoracicoabdominal ganglion	7 ± 1	2 of 4	2.20	Up
Salivary gland	6 ± 3	0 of 4	1.88	None
Crop	6 ± 1	0 of 4	2.20	None
Midgut	5 ± 1	0 of 4	1.70	None
Tubule	10 ± 2	0 of 4	3.20	Up
Hindgut	7 ± 0	1 of 4	2.30	Up
Heart	5 ± 1	1 of 4	1.71	None
Fat body	6 ± 2	0 of 4	2.06	Up
Ovary	3 ± 1	1 of 4	1.10	None
Testis	3 ± 0	0 of 4	1.10	None
Male accessory glands	6 ± 1	0 of 4	2.00	None
Virgin spermatheca	7 ± 1	2 of 4	2.36	Up
Mated spermatheca	9 ± 2	1 of 4	2.98	None
Adult carcass	4 ± 1	0 of 4	1.30	None
Larval CNS	5 ± 0	1 of 4	1.80	Up
Larval Salivary gland	5 ± 1	0 of 4	1.61	None
Larval midgut	8 ± 1	0 of 4	2.72	Up
Larval tubule	11 ± 2	2 of 4	3.50	Up
Larval hindgut	3 ± 0	1 of 4	1.17	None
Larval fat body	2 ± 0	0 of 4	0.70	None
Larval trachea	12 ± 2	3 of 4	3.80	Up
Larval carcass	6 ± 1	0 of 4	1.91	None
S2 cells (growing)	11 ± 1	4 of 4	3.54	Up
Whole fly	3 ± 0	0 of 4

():

Annotation Number : CG7323
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261556
Gbrowse : chr3L:20142710-20151693 (-) // 100.0 //
Probeset : 1638299_at
Accessions : protein= NP_001137984; /// NP_001137985; /// NP_001137986; /// NP_649182;, nucleotide= NM_001144512; /// NM_001144513; /// NM_001144514; /// NM_140925;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation
FlyMine data for FBgn0261556.
Homophila reports that CG7323 is a close match (7e-54) to human gene DSMA4;KIAA0720;PLEKHG5 (NP_941374), a gene associated with Spinal muscular atrophy, distal, autosomal recessive, 4, 611067 (3).
TRiP has 2 RNAi stocks for FBgn0261556 available for purchase.
VDRC has 4 RNAi stocks for FBgn0261556 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	211 ± 6	4 of 4	9.10	Up
Head	65 ± 4	4 of 4	2.80	Up
Eye	106 ± 12	4 of 4	4.55	Up
Thoracicoabdominal ganglion	212 ± 6	4 of 4	9.10	Up
Salivary gland	119 ± 4	4 of 4	5.15	Up
Crop	53 ± 1	4 of 4	2.30	Up
Midgut	139 ± 4	4 of 4	6.00	Up
Tubule	83 ± 6	4 of 4	3.60	Up
Hindgut	63 ± 1	4 of 4	2.70	Up
Heart	19 ± 3	4 of 4	0.82	None
Fat body	27 ± 5	4 of 4	1.18	None
Ovary	2 ± 0	1 of 4	0.10	Down
Testis	3 ± 1	2 of 4	0.10	Down
Male accessory glands	14 ± 0	4 of 4	0.60	Down
Virgin spermatheca	31 ± 1	4 of 4	1.35	Up
Mated spermatheca	28 ± 2	4 of 4	1.20	None
Adult carcass	21 ± 2	4 of 4	0.90	None
Larval CNS	56 ± 7	4 of 4	2.42	Up
Larval Salivary gland	26 ± 2	4 of 4	1.14	None
Larval midgut	144 ± 4	4 of 4	6.21	Up
Larval tubule	107 ± 3	4 of 4	4.60	Up
Larval hindgut	64 ± 3	4 of 4	2.77	Up
Larval fat body	7 ± 2	1 of 4	0.30	Down
Larval trachea	72 ± 10	4 of 4	3.12	Up
Larval carcass	36 ± 2	4 of 4	1.57	Up
S2 cells (growing)	232 ± 12	4 of 4	9.98	Up
Whole fly	23 ± 1	4 of 4

Looking for FBgn0261556. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720