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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261561 through 18771 annotations produced 1 hits



():

Annotation Number : CG10999
Flybase ID : FBgn0261561
Gbrowse : chr3R:1640388-1644550 (+) // 100.0 //
Probeset : 1629674_s_at
Accessions : protein= NP_649593; /// NP_731012; /// NP_731014;, nucleotide= NM_141336; /// NM_169109; /// NM_169111;
FlyMine data for FBgn0261561.
VDRC has 2 RNAi stocks for FBgn0261561 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 14 of 4 0.10Down
Head86 104 of 4 0.40Down
Eye73 134 of 4 0.37Down
Thoracicoabdominal ganglion22 24 of 4 0.10Down
Salivary gland317 194 of 4 1.60Up
Crop66 54 of 4 0.30Down
Midgut2 00 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut41 74 of 4 0.20Down
Heart22 14 of 4 0.11Down
Fat body13 71 of 4 0.07Down
Ovary6 00 of 4 0.00Down
Testis1871 394 of 4 9.40Up
Male accessory glands141 134 of 4 0.70Down
Virgin spermatheca27 24 of 4 0.14Down
Mated spermatheca31 34 of 4 0.16Down
Adult carcass78 64 of 4 0.40Down
Larval CNS7 20 of 4 0.04Down
Larval Salivary gland337 364 of 4 1.70Up
Larval midgut10 20 of 4 0.05Down
Larval tubule4 10 of 4 0.00Down
Larval hindgut60 54 of 4 0.30Down
Larval fat body228 1224 of 4 1.20None
Larval trachea263 544 of 4 1.33None
Larval carcass376 64 of 4 1.90Up
S2 cells (growing)55 44 of 4 0.28Down
Whole fly198 124 of 4

Looking for FBgn0261561. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime