FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261563 through 18771 annotations produced 1 hits

():

Annotation Number : CG15288
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261563
Gbrowse : chr2L:14263521-14328265 (+) // 100.0 //
Probeset : 1626934_a_at
Accessions : protein= NP_723870;, nucleotide= NM_165086;
Pathway : 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005604 // basement membrane //
Interpro : 0005102 // receptor binding // inferred from electronic annotation /// 0005488 // binding // traceable author statement
FlyMine data for FBgn0261563.
Homophila reports that CG15288 is a close match (9e-11) to human gene AGS2;NOTCH2 (NP_077719), a gene associated with Alagille syndrome 2, 610205 (3).
BioGrid reports that CG15288 interacts with CG17086 .
TRiP has 1 RNAi stocks for FBgn0261563 available for purchase.
VDRC has 3 RNAi stocks for FBgn0261563 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	20 ± 1	4 of 4	0.70	Down
Head	39 ± 2	4 of 4	1.50	Up
Eye	31 ± 1	4 of 4	1.17	None
Thoracicoabdominal ganglion	27 ± 2	4 of 4	1.00	None
Salivary gland	158 ± 8	4 of 4	5.85	Up
Crop	91 ± 5	4 of 4	3.40	Up
Midgut	38 ± 3	4 of 4	1.40	Up
Tubule	11 ± 1	2 of 4	0.40	Down
Hindgut	62 ± 8	4 of 4	2.30	Up
Heart	492 ± 65	4 of 4	18.13	Up
Fat body	65 ± 5	4 of 4	2.40	Up
Ovary	23 ± 2	4 of 4	0.90	None
Testis	12 ± 0	4 of 4	0.50	Down
Male accessory glands	142 ± 17	4 of 4	5.30	Up
Virgin spermatheca	89 ± 2	4 of 4	3.29	Up
Mated spermatheca	78 ± 9	4 of 4	2.89	Up
Adult carcass	52 ± 4	4 of 4	1.90	Up
Larval CNS	78 ± 12	4 of 4	2.90	Up
Larval Salivary gland	34 ± 4	4 of 4	1.29	None
Larval midgut	15 ± 3	3 of 4	0.56	Down
Larval tubule	4 ± 1	0 of 4	0.20	Down
Larval hindgut	62 ± 1	4 of 4	2.30	Up
Larval fat body	17 ± 3	1 of 4	0.60	None
Larval trachea	36 ± 6	4 of 4	1.35	None
Larval carcass	25 ± 1	4 of 4	0.93	None
S2 cells (growing)	67 ± 4	4 of 4	2.48	Up
Whole fly	27 ± 2	4 of 4

Looking for FBgn0261563. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720