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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261564 through 18771 annotations produced 2 hits



():

Annotation Number : CG30190
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261564
Gbrowse : chr2R:18816254-18818802 (+) // 100.0 //
Probeset : 1637460_at
Accessions : protein= NP_001097426; /// NP_001097427; /// NP_611737;, nucleotide= NM_001103956; /// NM_001103957; /// NM_137893;
FlyMine data for FBgn0261564.
TRiP has 1 RNAi stocks for FBgn0261564 available for purchase.
VDRC has 3 RNAi stocks for FBgn0261564 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 ± 24 of 4 2.10Up
Head47 ± 44 of 4 1.50Up
Eye15 ± 13 of 4 0.49Down
Thoracicoabdominal ganglion106 ± 34 of 4 3.40Up
Salivary gland16 ± 40 of 4 0.53Down
Crop77 ± 54 of 4 2.50Up
Midgut10 ± 31 of 4 0.30Down
Tubule11 ± 10 of 4 0.40Down
Hindgut52 ± 24 of 4 1.70Up
Heart56 ± 14 of 4 1.83Up
Fat body18 ± 40 of 4 0.60Down
Ovary5 ± 20 of 4 0.20Down
Testis9 ± 10 of 4 0.30Down
Male accessory glands14 ± 40 of 4 0.50Down
Virgin spermatheca7 ± 20 of 4 0.25Down
Mated spermatheca7 ± 21 of 4 0.26Down
Adult carcass113 ± 54 of 4 3.70Up
Larval CNS17 ± 24 of 4 0.55Down
Larval Salivary gland6 ± 11 of 4 0.20Down
Larval midgut15 ± 21 of 4 0.49Down
Larval tubule15 ± 21 of 4 0.50Down
Larval hindgut41 ± 34 of 4 1.35None
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea16 ± 24 of 4 0.54Down
Larval carcass122 ± 174 of 4 3.94Up
S2 cells (growing)15 ± 14 of 4 0.50Down
Whole fly31 ± 14 of 4



():

Annotation Number : CG30193
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261564
Gbrowse : chr2R:18812612-18817254 (+) // 100.0 //
Probeset : 1632278_s_at
Accessions : protein= NP_001097425; /// NP_001097426; /// NP_001097427; /// NP_611737; /// NP_726266; /// NP_726267; /// NP_726268; /// NP_726269; /// NP_726270; /// NP_726271;, nucleotide= NM_001103955; /// NM_001103956; /// NM_001103957; /// NM_137893; /// NM_166571; /// NM_166572; /// NM_166573; /// NM_166574; /// NM_166575; /// NM_166576;
FlyMine data for FBgn0261564.
Homophila reports that CG30193 is a close match (3e-45) to human gene C2ORF23;REEP1;SPG31 (NP_075063), a gene associated with Spastic paraplegia 31, 610250 (3).
BioGrid reports that CG30193 interacts with CG3651 .
TRiP has 1 RNAi stocks for FBgn0261564 available for purchase.
VDRC has 3 RNAi stocks for FBgn0261564 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 ± 14 of 4 0.40Down
Head27 ± 34 of 4 0.30Down
Eye18 ± 31 of 4 0.19Down
Thoracicoabdominal ganglion60 ± 14 of 4 0.60Down
Salivary gland51 ± 94 of 4 0.52Down
Crop31 ± 14 of 4 0.30Down
Midgut27 ± 31 of 4 0.30Down
Tubule17 ± 11 of 4 0.20Down
Hindgut23 ± 04 of 4 0.20Down
Heart35 ± 14 of 4 0.36Down
Fat body28 ± 32 of 4 0.29Down
Ovary146 ± 74 of 4 1.50Up
Testis483 ± 64 of 4 4.90Up
Male accessory glands15 ± 31 of 4 0.20Down
Virgin spermatheca13 ± 12 of 4 0.14Down
Mated spermatheca22 ± 23 of 4 0.23Down
Adult carcass33 ± 43 of 4 0.30Down
Larval CNS55 ± 64 of 4 0.56Down
Larval Salivary gland92 ± 123 of 4 0.94None
Larval midgut49 ± 43 of 4 0.50Down
Larval tubule35 ± 43 of 4 0.40Down
Larval hindgut34 ± 24 of 4 0.35Down
Larval fat body120 ± 194 of 4 1.20None
Larval trachea80 ± 64 of 4 0.82None
Larval carcass21 ± 12 of 4 0.22Down
S2 cells (growing)157 ± 104 of 4 1.61Up
Whole fly98 ± 74 of 4

Looking for FBgn0261564. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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