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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261565 through 18771 annotations produced 3 hits



():

Annotation Number : S.C3L002169
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261565
Gbrowse : chr3L:16895477-16899842 (+) // 100.0 //
Probeset : 1634439_at
Accessions : protein= NP_996113;, nucleotide= NM_206391;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0261565.
TRiP has 1 RNAi stocks for FBgn0261565 available for purchase.
VDRC has 8 RNAi stocks for FBgn0261565 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head11 11 of 4 0.30Down
Eye42 54 of 4 0.96None
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland19 11 of 4 0.45None
Crop6 20 of 4 0.10Down
Midgut1 00 of 4 0.00Down
Tubule3 00 of 4 0.10Down
Hindgut7 10 of 4 0.20Down
Heart7 00 of 4 0.16Down
Fat body4 40 of 4 0.11Down
Ovary2 00 of 4 0.10Down
Testis2 00 of 4 0.00Down
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.07Down
Mated spermatheca8 20 of 4 0.18Down
Adult carcass221 144 of 4 5.00Up
Larval CNS1 00 of 4 0.03Down
Larval Salivary gland154 114 of 4 3.53Up
Larval midgut2 00 of 4 0.05Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut6 10 of 4 0.15Down
Larval fat body9 30 of 4 0.20Down
Larval trachea7 31 of 4 0.16Down
Larval carcass4 10 of 4 0.10Down
S2 cells (growing)4 00 of 4 0.10Down
Whole fly43 84 of 4



():

Annotation Number : CG32171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261565
Gbrowse : chr3L:16858412-16915595 (+) // 100.0 //
Probeset : 1636953_a_at
Accessions : protein= NP_001163456; /// NP_648930; /// NP_648933; /// NP_730212; /// NP_730213; /// NP_996109; /// NP_996110; /// NP_996111; /// NP_996112;, nucleotide= NM_001169985; /// NM_140673; /// NM_140676; /// NM_168694; /// NM_170635; /// NM_206387; /// NM_206388; /// NM_206389; /// NM_206390;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0261565.
Homophila reports that CG32171 is a close match (8e-11) to human gene LMX1B;NPS1 (NP_002307), a gene associated with Nail-patella syndrome with open-angle glaucoma, 137750 (3);Nail-patella syndrome, 161200 (3).
BioGrid reports that CG32171 interacts with CG7368 CG3850 CG4193 CG9014 CG9184 CG9283 .
TRiP has 1 RNAi stocks for FBgn0261565 available for purchase.
VDRC has 8 RNAi stocks for FBgn0261565 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain308 84 of 4 0.70Down
Head757 664 of 4 1.70Up
Eye570 304 of 4 1.25None
Thoracicoabdominal ganglion583 294 of 4 1.30Up
Salivary gland1016 124 of 4 2.23Up
Crop3076 374 of 4 6.70Up
Midgut421 144 of 4 0.90None
Tubule172 354 of 4 0.40Down
Hindgut1306 774 of 4 2.90Up
Heart840 914 of 4 1.84Up
Fat body191 234 of 4 0.42Down
Ovary68 94 of 4 0.10Down
Testis88 34 of 4 0.20Down
Male accessory glands533 454 of 4 1.20None
Virgin spermatheca287 114 of 4 0.63Down
Mated spermatheca443 464 of 4 0.97None
Adult carcass1450 444 of 4 3.20Up
Larval CNS84 64 of 4 0.18Down
Larval Salivary gland648 854 of 4 1.42None
Larval midgut281 124 of 4 0.62Down
Larval tubule253 224 of 4 0.60Down
Larval hindgut918 304 of 4 2.01Up
Larval fat body224 154 of 4 0.50Down
Larval trachea318 204 of 4 0.70Down
Larval carcass1276 784 of 4 2.79Up
S2 cells (growing)174 14 of 4 0.38Down
Whole fly456 414 of 4



():

Annotation Number : CG11915
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261565
Gbrowse : chr3L:16892566-16900264 (+) // 100.0 //
Probeset : 1629499_at
Accessions : protein= NP_648931;, nucleotide= NM_140674;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0261565.
TRiP has 1 RNAi stocks for FBgn0261565 available for purchase.
VDRC has 8 RNAi stocks for FBgn0261565 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 20 of 4 0.10Down
Head154 74 of 4 1.70Up
Eye521 514 of 4 5.59Up
Thoracicoabdominal ganglion17 10 of 4 0.20Down
Salivary gland36 30 of 4 0.40Down
Crop111 54 of 4 1.20None
Midgut14 21 of 4 0.20Down
Tubule14 11 of 4 0.20Down
Hindgut78 44 of 4 0.80None
Heart136 134 of 4 1.47Up
Fat body15 30 of 4 0.17Down
Ovary5 10 of 4 0.10Down
Testis3 00 of 4 0.00Down
Male accessory glands40 22 of 4 0.40Down
Virgin spermatheca24 00 of 4 0.26Down
Mated spermatheca27 12 of 4 0.29Down
Adult carcass347 254 of 4 3.70Up
Larval CNS5 20 of 4 0.05Down
Larval Salivary gland580 704 of 4 6.22Up
Larval midgut30 24 of 4 0.32Down
Larval tubule8 20 of 4 0.10Down
Larval hindgut61 64 of 4 0.66Down
Larval fat body18 50 of 4 0.20Down
Larval trachea31 74 of 4 0.33Down
Larval carcass253 164 of 4 2.72Up
S2 cells (growing)3 10 of 4 0.04Down
Whole fly93 94 of 4

Looking for FBgn0261565. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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