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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261570 through 18771 annotations produced 3 hits



():

Annotation Number : CG15816
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261570
Gbrowse : chrX:17633306-17635130 (+) // 100.0 //
Probeset : 1625545_at
Accessions : protein= NP_573241;, nucleotide= NM_133013;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0261570.
VDRC has 4 RNAi stocks for FBgn0261570 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.50None
Head1 00 of 4 0.80None
Eye0 00 of 4 0.63None
Thoracicoabdominal ganglion1 00 of 4 0.80None
Salivary gland4 20 of 4 3.33None
Crop1 00 of 4 0.90None
Midgut6 10 of 4 5.20Up
Tubule1 00 of 4 0.90None
Hindgut1 00 of 4 1.20None
Heart0 00 of 4 0.63None
Fat body1 00 of 4 0.92None
Ovary0 00 of 4 0.50None
Testis1 00 of 4 0.80None
Male accessory glands10 40 of 4 8.20None
Virgin spermatheca1 00 of 4 0.85None
Mated spermatheca0 00 of 4 0.67None
Adult carcass3 10 of 4 2.60None
Larval CNS0 00 of 4 0.48None
Larval Salivary gland2 00 of 4 1.79None
Larval midgut44 10 of 433.88Up
Larval tubule0 00 of 4 0.50None
Larval hindgut5 10 of 4 4.25Up
Larval fat body1 00 of 4 1.00None
Larval trachea1 00 of 4 0.96None
Larval carcass1 00 of 4 1.42None
S2 cells (growing)7 10 of 4 5.87Up
Whole fly1 00 of 4



():

Annotation Number : CG32560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261570
Gbrowse : chrX:17604818-17645728 (+) // 100.0 //
Probeset : 1633336_at
Accessions : protein= NP_001097012; /// NP_573240; /// NP_728095;, nucleotide= NM_001103542; /// NM_133012; /// NM_167576; /// NM_167576;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0261570.
Homophila reports that CG32560 is a close match (7e-36) to human gene CMAVM;GAP;PKWS;RASA1 (NP_002881), a gene associated with Basal cell carcinoma, somatic (3);Capillary malformation-arteriovenous malformation, 608354 (3);Parkes Weber syndrome, 608355 (3).
BioGrid reports that CG32560 interacts with CG5735 CG8609 .
VDRC has 4 RNAi stocks for FBgn0261570 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain223 84 of 4 3.00Up
Head64 64 of 4 0.90None
Eye94 74 of 4 1.28None
Thoracicoabdominal ganglion153 34 of 4 2.10Up
Salivary gland65 94 of 4 0.88None
Crop123 54 of 4 1.70Up
Midgut68 34 of 4 0.90None
Tubule55 34 of 4 0.70Down
Hindgut132 84 of 4 1.80Up
Heart49 54 of 4 0.66None
Fat body45 24 of 4 0.61Down
Ovary150 44 of 4 2.00Up
Testis45 14 of 4 0.60Down
Male accessory glands72 54 of 4 1.00None
Virgin spermatheca31 34 of 4 0.42Down
Mated spermatheca40 24 of 4 0.54Down
Adult carcass58 94 of 4 0.80None
Larval CNS176 114 of 4 2.37Up
Larval Salivary gland62 44 of 4 0.84None
Larval midgut64 64 of 4 0.86None
Larval tubule51 24 of 4 0.70None
Larval hindgut106 54 of 4 1.44Up
Larval fat body43 54 of 4 0.60Down
Larval trachea146 114 of 4 1.97Up
Larval carcass78 64 of 4 1.06None
S2 cells (growing)136 64 of 4 1.83Up
Whole fly74 84 of 4



():

Annotation Number : CG32559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261570
Gbrowse : chrX:17628902-17629773 (+) // 100.0 //
Probeset : 1626633_at
Accessions : protein= NP_001097012; /// NP_573240; /// NP_728095;, nucleotide= NM_001103542; /// NM_133012; /// NM_167576; /// NM_167576;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0261570.
VDRC has 4 RNAi stocks for FBgn0261570 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.30None
Head4 11 of 4 5.90Up
Eye1 00 of 4 1.52None
Thoracicoabdominal ganglion4 20 of 4 5.10None
Salivary gland6 10 of 4 8.33Up
Crop3 10 of 4 4.40None
Midgut0 00 of 4 1.10None
Tubule3 10 of 4 3.80Up
Hindgut1 00 of 4 1.60None
Heart1 00 of 4 1.36None
Fat body2 10 of 4 3.42None
Ovary2 00 of 4 2.80None
Testis0 00 of 4 1.00None
Male accessory glands3 20 of 4 4.70None
Virgin spermatheca1 00 of 4 1.42None
Mated spermatheca3 11 of 4 4.06None
Adult carcass4 10 of 4 4.90None
Larval CNS2 10 of 4 3.03None
Larval Salivary gland6 20 of 4 8.06None
Larval midgut3 10 of 4 3.79None
Larval tubule2 00 of 4 2.80None
Larval hindgut1 00 of 4 1.94None
Larval fat body3 10 of 4 4.70None
Larval trachea3 20 of 4 3.64None
Larval carcass0 00 of 4 1.06None
S2 cells (growing)1 00 of 4 1.36None
Whole fly0 00 of 4

Looking for FBgn0261570. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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