Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261573 through 18771 annotations produced 3 hits



():

Annotation Number : CG32535
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261573
Gbrowse : chrX:19422673-19424937 (+) // 100.0 //
Probeset : 1636771_at
Accessions : protein= NP_001014752; /// NP_001014753; /// NP_001014754; /// NP_001014755; /// NP_001014756;, nucleotide= NM_001014752; /// NM_001014753; /// NM_001014754; /// NM_001014755; /// NM_001014756;
Pathway : DNA-dependent // inferred from direct assay"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0261573.
TRiP has 1 RNAi stocks for FBgn0261573 available for purchase.
VDRC has 5 RNAi stocks for FBgn0261573 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain370 94 of 4 2.50Up
Head156 64 of 4 1.10None
Eye151 54 of 4 1.02None
Thoracicoabdominal ganglion318 94 of 4 2.10Up
Salivary gland201 124 of 4 1.36Up
Crop164 44 of 4 1.10Up
Midgut136 84 of 4 0.90None
Tubule193 154 of 4 1.30Up
Hindgut132 04 of 4 0.90Down
Heart114 74 of 4 0.78Down
Fat body115 94 of 4 0.78Down
Ovary305 84 of 4 2.10Up
Testis33 24 of 4 0.20Down
Male accessory glands248 94 of 4 1.70Up
Virgin spermatheca108 34 of 4 0.73Down
Mated spermatheca116 104 of 4 0.78Down
Adult carcass114 54 of 4 0.80Down
Larval CNS522 484 of 4 3.52Up
Larval Salivary gland259 74 of 4 1.75Up
Larval midgut156 44 of 4 1.06None
Larval tubule156 74 of 4 1.10None
Larval hindgut211 34 of 4 1.43Up
Larval fat body158 114 of 4 1.10None
Larval trachea269 274 of 4 1.81Up
Larval carcass174 54 of 4 1.18Up
S2 cells (growing)400 94 of 4 2.70Up
Whole fly148 24 of 4



():

Annotation Number : CG3878
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261573
Gbrowse : chrX:19415961-19419874 (+) // 100.0 //
Probeset : 1623954_s_at
Accessions : protein= NP_001014752; /// NP_001014753; /// NP_001014754; /// NP_001014755; /// NP_001014756;, nucleotide= NM_001014752; /// NM_001014753; /// NM_001014754; /// NM_001014755; /// NM_001014756;
Pathway : DNA-dependent // inferred from direct assay"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0261573.
TRiP has 1 RNAi stocks for FBgn0261573 available for purchase.
VDRC has 5 RNAi stocks for FBgn0261573 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 01 of 4 0.10Down
Head3 11 of 4 0.00Down
Eye9 03 of 4 0.06Down
Thoracicoabdominal ganglion8 13 of 4 0.10Down
Salivary gland12 31 of 4 0.09Down
Crop9 02 of 4 0.10Down
Midgut5 00 of 4 0.00Down
Tubule8 11 of 4 0.10Down
Hindgut5 11 of 4 0.00Down
Heart5 01 of 4 0.04Down
Fat body5 31 of 4 0.04Down
Ovary317 84 of 4 2.20Up
Testis9 04 of 4 0.10Down
Male accessory glands9 30 of 4 0.10Down
Virgin spermatheca7 01 of 4 0.05Down
Mated spermatheca7 21 of 4 0.05Down
Adult carcass9 12 of 4 0.10Down
Larval CNS143 264 of 4 0.99None
Larval Salivary gland14 14 of 4 0.10Down
Larval midgut5 10 of 4 0.04Down
Larval tubule7 11 of 4 0.00Down
Larval hindgut6 02 of 4 0.05Down
Larval fat body14 33 of 4 0.10Down
Larval trachea16 44 of 4 0.11Down
Larval carcass11 22 of 4 0.08Down
S2 cells (growing)10 14 of 4 0.07Down
Whole fly145 84 of 4



():

Annotation Number : CG32534
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261573
Gbrowse : chrX:19420873-19421365 (+) // 100.0 //
Probeset : 1623360_at
Accessions : protein= NP_728261;, nucleotide= NM_167660;
Pathway : DNA-dependent // inferred from direct assay"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0261573.
TRiP has 1 RNAi stocks for FBgn0261573 available for purchase.
VDRC has 5 RNAi stocks for FBgn0261573 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 14 of 4 1.70None
Head5 10 of 4 0.50None
Eye13 20 of 4 1.22None
Thoracicoabdominal ganglion10 21 of 4 0.90None
Salivary gland26 22 of 4 2.36Up
Crop5 20 of 4 0.50None
Midgut7 20 of 4 0.60None
Tubule3 00 of 4 0.30Down
Hindgut3 10 of 4 0.30None
Heart5 01 of 4 0.49None
Fat body7 60 of 4 0.66None
Ovary9 11 of 4 0.80None
Testis21 23 of 4 1.90None
Male accessory glands9 31 of 4 0.90None
Virgin spermatheca9 22 of 4 0.84None
Mated spermatheca9 11 of 4 0.87None
Adult carcass11 20 of 4 1.00None
Larval CNS15 33 of 4 1.39None
Larval Salivary gland6 20 of 4 0.59None
Larval midgut7 20 of 4 0.67None
Larval tubule5 20 of 4 0.50None
Larval hindgut9 22 of 4 0.86None
Larval fat body8 20 of 4 0.80None
Larval trachea14 40 of 4 1.29None
Larval carcass14 10 of 4 1.28None
S2 cells (growing)17 20 of 4 1.56None
Whole fly11 32 of 4

Looking for FBgn0261573. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime