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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261588 through 18771 annotations produced 1 hits



():

Annotation Number : CG11641
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033288
Gbrowse : chr2R:4274874-4283795 (+) // 99.8 //
Probeset : 1631222_at
Accessions : protein= NP_001137617; /// NP_610377;, nucleotide= NM_001144145; /// NM_136533;
Pathway : DNA-dependent // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annot
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0033288.
BDGP gene expression has embryonic in situ data for CG11641: 2 pix of staining in 1 body parts.
Homophila reports that CG11641 is a close match (5e-15) to human gene BRN3C;POU4F3 (NP_002691), a gene associated with Deafness, autosomal dominant 15, 602459 (3).
VDRC has 3 RNAi stocks for FBgn0033288 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain505 ± 174 of 417.10Up
Head96 ± 44 of 4 3.30Up
Eye62 ± 64 of 4 2.13Up
Thoracicoabdominal ganglion411 ± 264 of 414.00Up
Salivary gland9 ± 40 of 4 0.31Down
Crop7 ± 20 of 4 0.20Down
Midgut0 ± 00 of 4 0.00Down
Tubule5 ± 00 of 4 0.20Down
Hindgut10 ± 10 of 4 0.30Down
Heart7 ± 02 of 4 0.27Down
Fat body16 ± 44 of 4 0.55Down
Ovary0 ± 00 of 4 0.00Down
Testis185 ± 114 of 4 6.30Up
Male accessory glands7 ± 20 of 4 0.20Down
Virgin spermatheca16 ± 13 of 4 0.54Down
Mated spermatheca17 ± 42 of 4 0.59None
Adult carcass44 ± 74 of 4 1.50None
Larval CNS535 ± 674 of 418.17Up
Larval Salivary gland3 ± 11 of 4 0.12Down
Larval midgut0 ± 00 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.17Down
Larval fat body19 ± 71 of 4 0.60None
Larval trachea15 ± 34 of 4 0.51Down
Larval carcass24 ± 34 of 4 0.83None
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly29 ± 34 of 4

Looking for FBgn0261588. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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