Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261597 through 18771 annotations produced 1 hits



(CG2267):

Annotation Number : CG10305
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004413
Gbrowse : chr2L:18442497-18443237 (-) // 100.0 //
Probeset : 1632220_s_at
Accessions : protein= NP_523595; /// NP_724109; /// NP_724110;, nucleotide= NM_078871; /// NM_165252; /// NM_165253;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // i
FlyMine data for FBgn0004413.
BioGrid reports that CG10305 interacts with CG14164 CG14543 CG6310 CG10510 CG10728 CG11181 CG11228 CG11275 CG11941 CG13287 CG13576 CG15150 CG1528 CG1531 CG15781 CG16747 CG2116 CG2371 CG2851 CG3880 CG14578 CG4038 CG4167 CG4887 CG6240 CG6338 CG6667 CG7285 CG7524 CG8230 CG8487 CG9415 CG9640 CG9902 CG9986 .
VDRC has 2 RNAi stocks for FBgn0004413 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3274 914 of 4 0.80None
Head5001 2664 of 4 1.20None
Eye5847 784 of 4 1.39Up
Thoracicoabdominal ganglion4007 1124 of 4 1.00None
Salivary gland13497 5144 of 4 3.21Up
Crop6089 3064 of 4 1.40Up
Midgut5529 574 of 4 1.30Up
Tubule5346 944 of 4 1.30Up
Hindgut4969 1244 of 4 1.20None
Heart6014 3814 of 4 1.43Up
Fat body5736 7104 of 4 1.36Up
Ovary3724 604 of 4 0.90None
Testis1367 404 of 4 0.30Down
Male accessory glands8110 1674 of 4 1.90Up
Virgin spermatheca5522 1734 of 4 1.31Up
Mated spermatheca5547 1514 of 4 1.32Up
Adult carcass5321 3004 of 4 1.30Up
Larval CNS2804 2144 of 4 0.67Down
Larval Salivary gland7783 2534 of 4 1.85Up
Larval midgut5937 2234 of 4 1.41Up
Larval tubule5184 704 of 4 1.20None
Larval hindgut4482 724 of 4 1.06None
Larval fat body9572 11344 of 4 2.30Up
Larval trachea5373 2394 of 4 1.28Up
Larval carcass4708 3634 of 4 1.12None
S2 cells (growing)4388 494 of 4 1.04None
Whole fly4210 3144 of 4

Looking for FBgn0261597. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime