FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261599 through 18771 annotations produced 2 hits

():

Annotation Number : CG8495
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037752
Gbrowse : chr3R:5603817-5604800 (+) // 100.0 //
Probeset : 1626693_at
Accessions : protein= NP_649946;, nucleotide= NM_141689;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0046872 // metal ion binding //
FlyMine data for FBgn0037752.
BDGP gene expression has embryonic in situ data for CG8495: 4 pix of staining in 1 body parts.
BioGrid reports that CG8495 interacts with CG9638 .
VDRC has 2 RNAi stocks for FBgn0037752 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3288 ± 57	4 of 4	0.80	Down
Head	4690 ± 206	4 of 4	1.20	None
Eye	6311 ± 107	4 of 4	1.56	Up
Thoracicoabdominal ganglion	3474 ± 75	4 of 4	0.90	None
Salivary gland	10699 ± 401	4 of 4	2.65	Up
Crop	5127 ± 305	4 of 4	1.30	Up
Midgut	5322 ± 84	4 of 4	1.30	Up
Tubule	623 ± 30	4 of 4	0.20	Down
Hindgut	5033 ± 113	4 of 4	1.20	Up
Heart	6402 ± 528	4 of 4	1.58	Up
Fat body	4996 ± 690	4 of 4	1.24	None
Ovary	3001 ± 79	4 of 4	0.70	Down
Testis	903 ± 50	4 of 4	0.20	Down
Male accessory glands	7584 ± 203	4 of 4	1.90	Up
Virgin spermatheca	437 ± 21	4 of 4	0.11	Down
Mated spermatheca	626 ± 96	4 of 4	0.15	Down
Adult carcass	5032 ± 138	4 of 4	1.20	Up
Larval CNS	2456 ± 209	4 of 4	0.61	Down
Larval Salivary gland	6022 ± 251	4 of 4	1.49	Up
Larval midgut	4070 ± 91	4 of 4	1.01	None
Larval tubule	4258 ± 111	4 of 4	1.10	None
Larval hindgut	3739 ± 47	4 of 4	0.93	None
Larval fat body	7471 ± 810	4 of 4	1.80	Up
Larval trachea	6255 ± 350	4 of 4	1.55	Up
Larval carcass	4516 ± 387	4 of 4	1.12	None
S2 cells (growing)	4162 ± 117	4 of 4	1.03	None
Whole fly	4042 ± 210	4 of 4

():

Annotation Number : CG8495
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037752
Gbrowse : chr3R:5603817-5604800 (+) // 100.0 //
Probeset : 1629867_a_at
Accessions : protein= NP_649946;, nucleotide= NM_141689;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0046872 // metal ion binding //
FlyMine data for FBgn0037752.
BDGP gene expression has embryonic in situ data for CG8495: 4 pix of staining in 1 body parts.
BioGrid reports that CG8495 interacts with CG9638 .
VDRC has 2 RNAi stocks for FBgn0037752 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3120 ± 77	4 of 4	0.90	None
Head	4496 ± 126	4 of 4	1.30	Up
Eye	6005 ± 89	4 of 4	1.69	Up
Thoracicoabdominal ganglion	3989 ± 133	4 of 4	1.10	None
Salivary gland	10536 ± 257	4 of 4	2.96	Up
Crop	4963 ± 356	4 of 4	1.40	Up
Midgut	4196 ± 72	4 of 4	1.20	Up
Tubule	2318 ± 70	4 of 4	0.70	Down
Hindgut	4510 ± 95	4 of 4	1.30	Up
Heart	5889 ± 375	4 of 4	1.66	Up
Fat body	4709 ± 762	4 of 4	1.32	Up
Ovary	2886 ± 60	4 of 4	0.80	Down
Testis	1450 ± 46	4 of 4	0.40	Down
Male accessory glands	8661 ± 179	4 of 4	2.40	Up
Virgin spermatheca	3690 ± 36	4 of 4	1.04	None
Mated spermatheca	3801 ± 118	4 of 4	1.07	None
Adult carcass	5323 ± 236	4 of 4	1.50	Up
Larval CNS	2215 ± 175	4 of 4	0.62	Down
Larval Salivary gland	6081 ± 240	4 of 4	1.71	Up
Larval midgut	3751 ± 70	4 of 4	1.06	None
Larval tubule	4162 ± 152	4 of 4	1.20	Up
Larval hindgut	3653 ± 32	4 of 4	1.03	None
Larval fat body	6894 ± 747	4 of 4	1.90	Up
Larval trachea	5488 ± 233	4 of 4	1.54	Up
Larval carcass	4093 ± 400	4 of 4	1.15	None
S2 cells (growing)	3602 ± 117	4 of 4	1.01	None
Whole fly	3555 ± 165	4 of 4

Looking for FBgn0261599. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720