FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261602 through 18771 annotations produced 1 hits

():

Annotation Number : CG1263
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024939
Gbrowse : chr3L:2587449-2588997 (+) // 100.0 //
Probeset : 1628775_s_at
Accessions : protein= NP_524726; /// NP_728756;, nucleotide= NM_079987; /// NM_167955;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0024939.
BDGP gene expression has embryonic in situ data for RpL8: 4 pix of staining in 1 body parts.
BioGrid reports that CG1263 interacts with CG14820 CG17870 CG2116 CG32096 CG32635 CG9933 .
VDRC has 2 RNAi stocks for FBgn0024939 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2821 ± 77	4 of 4	0.80	None
Head	4089 ± 166	4 of 4	1.10	None
Eye	5450 ± 69	4 of 4	1.48	Up
Thoracicoabdominal ganglion	3606 ± 111	4 of 4	1.00	None
Salivary gland	9631 ± 173	4 of 4	2.62	Up
Crop	5272 ± 282	4 of 4	1.40	Up
Midgut	4430 ± 47	4 of 4	1.20	Up
Tubule	5079 ± 27	4 of 4	1.40	Up
Hindgut	4432 ± 106	4 of 4	1.20	Up
Heart	5092 ± 435	4 of 4	1.38	Up
Fat body	4613 ± 449	4 of 4	1.25	Up
Ovary	2954 ± 54	4 of 4	0.80	Down
Testis	912 ± 22	4 of 4	0.20	Down
Male accessory glands	7980 ± 320	4 of 4	2.20	Up
Virgin spermatheca	4623 ± 211	4 of 4	1.26	Up
Mated spermatheca	4789 ± 162	4 of 4	1.30	Up
Adult carcass	4902 ± 286	4 of 4	1.30	Up
Larval CNS	2433 ± 152	4 of 4	0.66	Down
Larval Salivary gland	6437 ± 293	4 of 4	1.75	Up
Larval midgut	3487 ± 77	4 of 4	0.95	None
Larval tubule	4357 ± 58	4 of 4	1.20	Up
Larval hindgut	3645 ± 9	4 of 4	0.99	None
Larval fat body	6514 ± 779	4 of 4	1.80	Up
Larval trachea	5215 ± 224	4 of 4	1.42	Up
Larval carcass	4077 ± 299	4 of 4	1.11	None
S2 cells (growing)	4191 ± 61	4 of 4	1.14	None
Whole fly	3677 ± 171	4 of 4

Looking for FBgn0261602. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720