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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261602 through 18771 annotations produced 1 hits



():

Annotation Number : CG1263
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024939
Gbrowse : chr3L:2587449-2588997 (+) // 100.0 //
Probeset : 1628775_s_at
Accessions : protein= NP_524726; /// NP_728756;, nucleotide= NM_079987; /// NM_167955;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0024939.
BDGP gene expression has embryonic in situ data for RpL8: 4 pix of staining in 1 body parts.
BioGrid reports that CG1263 interacts with CG14820 CG17870 CG2116 CG32096 CG32635 CG9933 .
VDRC has 2 RNAi stocks for FBgn0024939 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2821 774 of 4 0.80None
Head4089 1664 of 4 1.10None
Eye5450 694 of 4 1.48Up
Thoracicoabdominal ganglion3606 1114 of 4 1.00None
Salivary gland9631 1734 of 4 2.62Up
Crop5272 2824 of 4 1.40Up
Midgut4430 474 of 4 1.20Up
Tubule5079 274 of 4 1.40Up
Hindgut4432 1064 of 4 1.20Up
Heart5092 4354 of 4 1.38Up
Fat body4613 4494 of 4 1.25Up
Ovary2954 544 of 4 0.80Down
Testis912 224 of 4 0.20Down
Male accessory glands7980 3204 of 4 2.20Up
Virgin spermatheca4623 2114 of 4 1.26Up
Mated spermatheca4789 1624 of 4 1.30Up
Adult carcass4902 2864 of 4 1.30Up
Larval CNS2433 1524 of 4 0.66Down
Larval Salivary gland6437 2934 of 4 1.75Up
Larval midgut3487 774 of 4 0.95None
Larval tubule4357 584 of 4 1.20Up
Larval hindgut3645 94 of 4 0.99None
Larval fat body6514 7794 of 4 1.80Up
Larval trachea5215 2244 of 4 1.42Up
Larval carcass4077 2994 of 4 1.11None
S2 cells (growing)4191 614 of 4 1.14None
Whole fly3677 1714 of 4

Looking for FBgn0261602. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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