Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261608 through 18771 annotations produced 1 hits



():

Annotation Number : CG5827
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028696
Gbrowse : chr2L:5071002-5072055 (+) // 100.0 //
Probeset : 1639957_s_at
Accessions : protein= NP_524781; /// NP_723060;, nucleotide= NM_080042; /// NM_164628;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // i
FlyMine data for FBgn0028696.
BDGP gene expression has embryonic in situ data for RpL37a: 4 pix of staining in 2 body parts.
BioGrid reports that CG5827 interacts with CG6042 .
VDRC has 3 RNAi stocks for FBgn0028696 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2811 ± 1084 of 4 0.80None
Head4019 ± 1694 of 4 1.10None
Eye5869 ± 1254 of 4 1.64Up
Thoracicoabdominal ganglion4026 ± 744 of 4 1.10None
Salivary gland9107 ± 3124 of 4 2.54Up
Crop5548 ± 4154 of 4 1.50Up
Midgut4708 ± 794 of 4 1.30Up
Tubule4566 ± 504 of 4 1.30Up
Hindgut4312 ± 1104 of 4 1.20None
Heart6569 ± 5044 of 4 1.83Up
Fat body4510 ± 6544 of 4 1.26None
Ovary2972 ± 934 of 4 0.80None
Testis1126 ± 84 of 4 0.30Down
Male accessory glands8225 ± 2934 of 4 2.30Up
Virgin spermatheca4387 ± 1914 of 4 1.23None
Mated spermatheca4495 ± 1524 of 4 1.26Up
Adult carcass5534 ± 2864 of 4 1.50Up
Larval CNS2289 ± 1874 of 4 0.64Down
Larval Salivary gland6213 ± 2674 of 4 1.74Up
Larval midgut4049 ± 784 of 4 1.13None
Larval tubule4757 ± 474 of 4 1.30Up
Larval hindgut3720 ± 594 of 4 1.04None
Larval fat body7949 ± 8234 of 4 2.20Up
Larval trachea5417 ± 2664 of 4 1.51Up
Larval carcass4362 ± 3794 of 4 1.22None
S2 cells (growing)3751 ± 1084 of 4 1.05None
Whole fly3580 ± 2674 of 4

Looking for FBgn0261608. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime