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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261612 through 18771 annotations produced 2 hits



():

Annotation Number : CG15709
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034100
Gbrowse : chr2R:12141707-12142821 (-) // 100.0 //
Probeset : 1628609_at
Accessions : protein= NP_611105;, nucleotide= NM_137261;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0034100.
VDRC has 5 RNAi stocks for FBgn0034100 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 2.20None
Head3 10 of 4 2.00None
Eye2 10 of 4 1.44None
Thoracicoabdominal ganglion0 00 of 4 0.50None
Salivary gland1 00 of 4 0.90None
Crop2 10 of 4 1.30None
Midgut4 10 of 4 2.10None
Tubule3 00 of 4 1.70None
Hindgut2 00 of 4 1.20None
Heart2 00 of 4 1.52None
Fat body1 00 of 4 0.73None
Ovary1 00 of 4 0.90None
Testis3 00 of 4 1.70Up
Male accessory glands3 20 of 4 1.90None
Virgin spermatheca1 00 of 4 0.52None
Mated spermatheca2 10 of 4 1.32None
Adult carcass1 00 of 4 0.90None
Larval CNS2 00 of 4 1.44None
Larval Salivary gland1 00 of 4 0.97None
Larval midgut1 00 of 4 0.55None
Larval tubule5 01 of 4 2.90Up
Larval hindgut1 00 of 4 0.52None
Larval fat body2 00 of 4 1.30None
Larval trachea1 00 of 4 0.87None
Larval carcass3 00 of 4 1.82None
S2 cells (growing)4 20 of 4 2.48None
Whole fly1 00 of 4



():

Annotation Number : CG7779
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014462
Gbrowse : chr2R:12130649-12137234 (-) // 100.0 //
Probeset : 1635738_at
Accessions : protein= NP_477116;, nucleotide= NM_057768;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005216 // ion channel activity // inferred fro
FlyMine data for FBgn0014462.
Homophila reports that CG7779 is a close match (2e-31) to human gene HERG;KCNH2;LQT2;SQT1 (NP_742053), a gene associated with Long QT syndrome-2 (3);Short QT syndrome-1, 609620 (3);{Long QT syndrome, acquired, susceptibility to} (3).
VDRC has 5 RNAi stocks for FBgn0014462 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 24 of 4 5.10Up
Head17 14 of 4 1.50None
Eye7 22 of 4 0.65None
Thoracicoabdominal ganglion45 14 of 4 4.00Up
Salivary gland22 31 of 4 1.97Up
Crop141 74 of 412.40Up
Midgut26 04 of 4 2.30Up
Tubule21 14 of 4 1.90Up
Hindgut43 24 of 4 3.80Up
Heart32 74 of 4 2.86None
Fat body50 224 of 4 4.40Up
Ovary2 00 of 4 0.20Down
Testis14 24 of 4 1.30None
Male accessory glands11 21 of 4 1.00None
Virgin spermatheca17 24 of 4 1.52None
Mated spermatheca26 04 of 4 2.33Up
Adult carcass45 84 of 4 4.00Up
Larval CNS23 34 of 4 2.09Up
Larval Salivary gland2 00 of 4 0.21Down
Larval midgut52 34 of 4 4.60Up
Larval tubule8 12 of 4 0.80None
Larval hindgut35 34 of 4 3.13Up
Larval fat body9 03 of 4 0.80None
Larval trachea163 314 of 414.33Up
Larval carcass38 64 of 4 3.33Up
S2 cells (growing)3 10 of 4 0.27Down
Whole fly11 13 of 4

Looking for FBgn0261612. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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