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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261617 through 18771 annotations produced 2 hits



():

Annotation Number : CG15321
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015624
Gbrowse : chrX:9576997-9577705 (-) // 100.0 //
Probeset : 1637135_at
Accessions : protein= NP_572578;, nucleotide= NM_132350;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007088 // regulation of mitosis // inferred from genetic inte
Interpro : 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred f
FlyMine data for FBgn0015624.
BioGrid reports that CG15321 interacts with CG4183 .
VDRC has 5 RNAi stocks for FBgn0015624 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 44 of 4 5.10Up
Head6 01 of 4 0.80None
Eye13 04 of 4 1.86Up
Thoracicoabdominal ganglion22 34 of 4 3.10Up
Salivary gland26 41 of 4 3.62Up
Crop15 12 of 4 2.10Up
Midgut12 00 of 4 1.70Up
Tubule10 11 of 4 1.50Up
Hindgut10 10 of 4 1.40None
Heart19 24 of 4 2.72Up
Fat body14 11 of 4 2.02Up
Ovary25 24 of 4 3.50Up
Testis9 02 of 4 1.30None
Male accessory glands13 10 of 4 1.80Up
Virgin spermatheca9 11 of 4 1.33None
Mated spermatheca12 30 of 4 1.74None
Adult carcass8 30 of 4 1.10None
Larval CNS19 54 of 4 2.69Up
Larval Salivary gland19 32 of 4 2.65Up
Larval midgut10 00 of 4 1.40None
Larval tubule12 20 of 4 1.70None
Larval hindgut9 21 of 4 1.26None
Larval fat body10 10 of 4 1.50None
Larval trachea27 34 of 4 3.81Up
Larval carcass11 00 of 4 1.63None
S2 cells (growing)4 10 of 4 0.64None
Whole fly7 11 of 4



():

Annotation Number : CG15319
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015624
Gbrowse : chrX:9563250-9576909 (-) // 99.9 //
Probeset : 1622925_at
Accessions : protein= NP_524642;, nucleotide= NM_079903;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007088 // regulation of mitosis // inferred from genetic inte
Interpro : 0000123 // histone acetyltransferase complex // inferred from electronic annotation /// 0005634 // nucleus // inferred f
FlyMine data for FBgn0015624.
Homophila reports that CG15319 is a close match (0) to human gene CBP;CREBBP;RSTS (NP_004371), a gene associated with Rubenstein-Taybi syndrome, 180849 (3).
BioGrid reports that CG15319 interacts with CG11579 CG3263 CG2189 CG9885 CG9045 CG9045 CG9045 CG9045 CG1891 CG2621 CG3722 CG10388 CG2759 CG2125 CG2125 CG2125 CG2125 CG8887 CG1487 CG15861 CG9046 CG14534 CG17508 CG5708 CG11182 CG13510 CG14816 CG3629 CG13806 CG32139 CG5473 CG31000 CG5571 CG5650 CG7948 CG5568 CG5731 CG15218 CG31679 CG2865 CG10078 CG12723 CG4911 CG10246 CG31811 CG16892 CG8667 CG9930 CG4673 CG15112 CG4184 CG8594 CG8181 .
VDRC has 5 RNAi stocks for FBgn0015624 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain213 174 of 4 1.60None
Head29 54 of 4 0.20Down
Eye37 54 of 4 0.28Down
Thoracicoabdominal ganglion100 144 of 4 0.80None
Salivary gland53 114 of 4 0.40Down
Crop87 34 of 4 0.70Down
Midgut78 24 of 4 0.60Down
Tubule43 34 of 4 0.30Down
Hindgut86 74 of 4 0.70Down
Heart56 34 of 4 0.43Down
Fat body61 154 of 4 0.47Down
Ovary374 34 of 4 2.80Up
Testis48 64 of 4 0.40Down
Male accessory glands61 64 of 4 0.50Down
Virgin spermatheca35 14 of 4 0.27Down
Mated spermatheca52 34 of 4 0.40Down
Adult carcass54 84 of 4 0.40Down
Larval CNS162 154 of 4 1.23None
Larval Salivary gland151 114 of 4 1.14None
Larval midgut51 34 of 4 0.39Down
Larval tubule81 54 of 4 0.60Down
Larval hindgut98 44 of 4 0.75None
Larval fat body86 54 of 4 0.70Down
Larval trachea108 114 of 4 0.82None
Larval carcass129 114 of 4 0.98None
S2 cells (growing)121 14 of 4 0.92None
Whole fly132 124 of 4

Looking for FBgn0261617. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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