FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261618 through 18771 annotations produced 3 hits

():

Annotation Number : CG14066
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260724
Gbrowse : chr3R:24143904-24154005 (-) // 99.87 //
Probeset : 1636301_s_at
Accessions : protein= NP_001163757; /// NP_524998; /// NP_733244; /// NP_733245;, nucleotide= NM_001170286; /// NM_080259; /// NM_170365; /// NM_170366;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0260724.
VDRC has 5 RNAi stocks for FBgn0260724 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	509 ± 24	4 of 4	1.90	Up
Head	359 ± 15	4 of 4	1.30	Up
Eye	261 ± 16	4 of 4	0.96	None
Thoracicoabdominal ganglion	439 ± 4	4 of 4	1.60	Up
Salivary gland	403 ± 44	4 of 4	1.49	None
Crop	439 ± 17	4 of 4	1.60	Up
Midgut	274 ± 17	4 of 4	1.00	None
Tubule	251 ± 21	4 of 4	0.90	None
Hindgut	489 ± 15	4 of 4	1.80	Up
Heart	268 ± 22	4 of 4	0.99	None
Fat body	605 ± 44	4 of 4	2.23	Up
Ovary	414 ± 15	4 of 4	1.50	Up
Testis	37 ± 3	4 of 4	0.10	Down
Male accessory glands	1361 ± 83	4 of 4	5.00	Up
Virgin spermatheca	323 ± 21	4 of 4	1.19	None
Mated spermatheca	319 ± 18	4 of 4	1.18	None
Adult carcass	257 ± 21	4 of 4	0.90	None
Larval CNS	517 ± 59	4 of 4	1.91	Up
Larval Salivary gland	415 ± 39	4 of 4	1.53	Up
Larval midgut	317 ± 2	4 of 4	1.17	None
Larval tubule	137 ± 11	4 of 4	0.50	Down
Larval hindgut	461 ± 31	4 of 4	1.70	Up
Larval fat body	118 ± 14	4 of 4	0.40	Down
Larval trachea	336 ± 23	4 of 4	1.24	Up
Larval carcass	488 ± 80	4 of 4	1.80	None
S2 cells (growing)	15 ± 2	4 of 4	0.06	Down
Whole fly	271 ± 18	4 of 4

():

Annotation Number : CG14065
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260724
Gbrowse : chr3R:24159394-24160240 (-) // 100.0 //
Probeset : 1637315_at
Accessions : protein= NP_001163757; /// NP_524998; /// NP_733244; /// NP_733245;, nucleotide= NM_001170286; /// NM_080259; /// NM_170365; /// NM_170366;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0260724.
VDRC has 5 RNAi stocks for FBgn0260724 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 2	0 of 4	0.80	None
Head	1 ± 0	0 of 4	0.20	None
Eye	1 ± 0	0 of 4	0.18	None
Thoracicoabdominal ganglion	5 ± 2	0 of 4	1.00	None
Salivary gland	13 ± 6	0 of 4	2.12	None
Crop	6 ± 3	0 of 4	1.10	None
Midgut	3 ± 0	0 of 4	0.50	None
Tubule	1 ± 0	0 of 4	0.30	Down
Hindgut	2 ± 0	0 of 4	0.50	None
Heart	5 ± 1	0 of 4	0.85	None
Fat body	3 ± 0	0 of 4	0.50	None
Ovary	7 ± 3	0 of 4	1.30	None
Testis	3 ± 1	0 of 4	0.60	None
Male accessory glands	13 ± 5	0 of 4	2.30	None
Virgin spermatheca	1 ± 0	0 of 4	0.23	None
Mated spermatheca	1 ± 0	0 of 4	0.31	None
Adult carcass	8 ± 5	0 of 4	1.40	None
Larval CNS	4 ± 2	0 of 4	0.75	None
Larval Salivary gland	4 ± 1	0 of 4	0.77	None
Larval midgut	4 ± 1	0 of 4	0.75	None
Larval tubule	3 ± 1	0 of 4	0.60	None
Larval hindgut	8 ± 1	0 of 4	1.46	None
Larval fat body	2 ± 1	0 of 4	0.50	None
Larval trachea	4 ± 2	0 of 4	0.76	None
Larval carcass	11 ± 5	0 of 4	1.92	None
S2 cells (growing)	37 ± 2	0 of 4	6.15	Up
Whole fly	6 ± 2	0 of 4

():

Annotation Number : CG14066
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260724
Gbrowse : chr3R:24146303-24152063 (-) // 100.0 //
Probeset : 1633759_s_at
Accessions : protein= NP_001163757; /// NP_524998; /// NP_733244; /// NP_733245;, nucleotide= NM_001170286; /// NM_080259; /// NM_170365; /// NM_170366;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0260724.
VDRC has 5 RNAi stocks for FBgn0260724 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	63 ± 4	4 of 4	1.10	None
Head	46 ± 10	4 of 4	0.80	None
Eye	38 ± 3	3 of 4	0.70	Down
Thoracicoabdominal ganglion	61 ± 10	4 of 4	1.10	None
Salivary gland	53 ± 19	2 of 4	0.97	None
Crop	63 ± 6	4 of 4	1.10	None
Midgut	36 ± 2	1 of 4	0.70	Down
Tubule	14 ± 1	1 of 4	0.30	Down
Hindgut	58 ± 4	4 of 4	1.10	None
Heart	30 ± 1	4 of 4	0.56	Down
Fat body	44 ± 15	4 of 4	0.80	None
Ovary	59 ± 4	4 of 4	1.10	None
Testis	18 ± 0	4 of 4	0.30	Down
Male accessory glands	154 ± 15	4 of 4	2.80	Up
Virgin spermatheca	15 ± 0	2 of 4	0.28	Down
Mated spermatheca	9 ± 2	1 of 4	0.18	Down
Adult carcass	61 ± 15	4 of 4	1.10	None
Larval CNS	48 ± 10	4 of 4	0.88	None
Larval Salivary gland	34 ± 3	4 of 4	0.63	Down
Larval midgut	16 ± 2	0 of 4	0.30	Down
Larval tubule	17 ± 1	1 of 4	0.30	Down
Larval hindgut	43 ± 4	4 of 4	0.79	None
Larval fat body	30 ± 2	2 of 4	0.50	Down
Larval trachea	37 ± 7	4 of 4	0.68	Down
Larval carcass	49 ± 3	4 of 4	0.90	None
S2 cells (growing)	292 ± 22	4 of 4	5.32	Up
Whole fly	55 ± 4	4 of 4

Looking for FBgn0261618. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720