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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261618 through 18771 annotations produced 3 hits



():

Annotation Number : CG14066
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260724
Gbrowse : chr3R:24146303-24152063 (-) // 100.0 //
Probeset : 1633759_s_at
Accessions : protein= NP_001163757; /// NP_524998; /// NP_733244; /// NP_733245;, nucleotide= NM_001170286; /// NM_080259; /// NM_170365; /// NM_170366;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0260724.
VDRC has 5 RNAi stocks for FBgn0260724 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 44 of 4 1.10None
Head46 104 of 4 0.80None
Eye38 33 of 4 0.70Down
Thoracicoabdominal ganglion61 104 of 4 1.10None
Salivary gland53 192 of 4 0.97None
Crop63 64 of 4 1.10None
Midgut36 21 of 4 0.70Down
Tubule14 11 of 4 0.30Down
Hindgut58 44 of 4 1.10None
Heart30 14 of 4 0.56Down
Fat body44 154 of 4 0.80None
Ovary59 44 of 4 1.10None
Testis18 04 of 4 0.30Down
Male accessory glands154 154 of 4 2.80Up
Virgin spermatheca15 02 of 4 0.28Down
Mated spermatheca9 21 of 4 0.18Down
Adult carcass61 154 of 4 1.10None
Larval CNS48 104 of 4 0.88None
Larval Salivary gland34 34 of 4 0.63Down
Larval midgut16 20 of 4 0.30Down
Larval tubule17 11 of 4 0.30Down
Larval hindgut43 44 of 4 0.79None
Larval fat body30 22 of 4 0.50Down
Larval trachea37 74 of 4 0.68Down
Larval carcass49 34 of 4 0.90None
S2 cells (growing)292 224 of 4 5.32Up
Whole fly55 44 of 4



():

Annotation Number : CG14065
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260724
Gbrowse : chr3R:24159394-24160240 (-) // 100.0 //
Probeset : 1637315_at
Accessions : protein= NP_001163757; /// NP_524998; /// NP_733244; /// NP_733245;, nucleotide= NM_001170286; /// NM_080259; /// NM_170365; /// NM_170366;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0260724.
VDRC has 5 RNAi stocks for FBgn0260724 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 20 of 4 0.80None
Head1 00 of 4 0.20None
Eye1 00 of 4 0.18None
Thoracicoabdominal ganglion5 20 of 4 1.00None
Salivary gland13 60 of 4 2.12None
Crop6 30 of 4 1.10None
Midgut3 00 of 4 0.50None
Tubule1 00 of 4 0.30Down
Hindgut2 00 of 4 0.50None
Heart5 10 of 4 0.85None
Fat body3 00 of 4 0.50None
Ovary7 30 of 4 1.30None
Testis3 10 of 4 0.60None
Male accessory glands13 50 of 4 2.30None
Virgin spermatheca1 00 of 4 0.23None
Mated spermatheca1 00 of 4 0.31None
Adult carcass8 50 of 4 1.40None
Larval CNS4 20 of 4 0.75None
Larval Salivary gland4 10 of 4 0.77None
Larval midgut4 10 of 4 0.75None
Larval tubule3 10 of 4 0.60None
Larval hindgut8 10 of 4 1.46None
Larval fat body2 10 of 4 0.50None
Larval trachea4 20 of 4 0.76None
Larval carcass11 50 of 4 1.92None
S2 cells (growing)37 20 of 4 6.15Up
Whole fly6 20 of 4



():

Annotation Number : CG14066
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260724
Gbrowse : chr3R:24143904-24154005 (-) // 99.87 //
Probeset : 1636301_s_at
Accessions : protein= NP_001163757; /// NP_524998; /// NP_733244; /// NP_733245;, nucleotide= NM_001170286; /// NM_080259; /// NM_170365; /// NM_170366;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0260724.
VDRC has 5 RNAi stocks for FBgn0260724 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain509 244 of 4 1.90Up
Head359 154 of 4 1.30Up
Eye261 164 of 4 0.96None
Thoracicoabdominal ganglion439 44 of 4 1.60Up
Salivary gland403 444 of 4 1.49None
Crop439 174 of 4 1.60Up
Midgut274 174 of 4 1.00None
Tubule251 214 of 4 0.90None
Hindgut489 154 of 4 1.80Up
Heart268 224 of 4 0.99None
Fat body605 444 of 4 2.23Up
Ovary414 154 of 4 1.50Up
Testis37 34 of 4 0.10Down
Male accessory glands1361 834 of 4 5.00Up
Virgin spermatheca323 214 of 4 1.19None
Mated spermatheca319 184 of 4 1.18None
Adult carcass257 214 of 4 0.90None
Larval CNS517 594 of 4 1.91Up
Larval Salivary gland415 394 of 4 1.53Up
Larval midgut317 24 of 4 1.17None
Larval tubule137 114 of 4 0.50Down
Larval hindgut461 314 of 4 1.70Up
Larval fat body118 144 of 4 0.40Down
Larval trachea336 234 of 4 1.24Up
Larval carcass488 804 of 4 1.80None
S2 cells (growing)15 24 of 4 0.06Down
Whole fly271 184 of 4

Looking for FBgn0261618. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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