Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261630 through 18771 annotations produced 1 hits



():

Annotation Number : S.C2L001217
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2L:8891506-8891852 (+) // 100.0 //
Probeset : 1626297_at
Accessions : protein= NP_001034049; /// NP_001163596;, nucleotide= NM_001038960; /// NM_001170125;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic ann
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 1.60None
Head5 ± 11 of 4 2.80None
Eye5 ± 11 of 4 2.62None
Thoracicoabdominal ganglion4 ± 00 of 4 2.30None
Salivary gland13 ± 50 of 4 6.72None
Crop4 ± 20 of 4 2.50None
Midgut3 ± 00 of 4 1.70None
Tubule7 ± 00 of 4 3.60Up
Hindgut5 ± 00 of 4 2.60Up
Heart3 ± 11 of 4 1.85None
Fat body9 ± 22 of 4 5.09Up
Ovary1 ± 00 of 4 0.90None
Testis7 ± 13 of 4 3.90Up
Male accessory glands5 ± 10 of 4 2.60None
Virgin spermatheca9 ± 32 of 4 4.68None
Mated spermatheca9 ± 22 of 4 4.77None
Adult carcass7 ± 21 of 4 3.80None
Larval CNS5 ± 42 of 4 2.85None
Larval Salivary gland5 ± 10 of 4 2.76None
Larval midgut8 ± 11 of 4 4.32Up
Larval tubule6 ± 02 of 4 3.50Up
Larval hindgut5 ± 11 of 4 2.71None
Larval fat body55 ± 481 of 428.40None
Larval trachea6 ± 42 of 4 3.45None
Larval carcass7 ± 11 of 4 3.72None
S2 cells (growing)3 ± 00 of 4 1.82None
Whole fly2 ± 00 of 4

Looking for FBgn0261630. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime