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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261633 through 18771 annotations produced 1 hits



():

Annotation Number : S.C3L002005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3L:16026877-16027239 (+) // 100.0 //
Probeset : 1622951_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 1.80None
Head4 ± 10 of 4 2.80None
Eye3 ± 10 of 4 1.96None
Thoracicoabdominal ganglion0 ± 00 of 4 0.50None
Salivary gland5 ± 20 of 4 3.37None
Crop3 ± 10 of 4 2.20None
Midgut3 ± 00 of 4 2.20None
Tubule4 ± 00 of 4 2.70Up
Hindgut1 ± 00 of 4 0.60None
Heart3 ± 00 of 4 2.09None
Fat body8 ± 30 of 4 5.21Up
Ovary2 ± 00 of 4 1.30None
Testis2 ± 10 of 4 1.60None
Male accessory glands2 ± 10 of 4 1.70None
Virgin spermatheca5 ± 10 of 4 2.99None
Mated spermatheca4 ± 20 of 4 2.35None
Adult carcass6 ± 30 of 4 3.60None
Larval CNS3 ± 20 of 4 2.07None
Larval Salivary gland7 ± 21 of 4 4.29None
Larval midgut1 ± 00 of 4 0.97None
Larval tubule2 ± 10 of 4 1.40None
Larval hindgut3 ± 10 of 4 1.85None
Larval fat body4 ± 20 of 4 2.70None
Larval trachea0 ± 00 of 4 0.24None
Larval carcass3 ± 10 of 4 1.81None
S2 cells (growing)3 ± 00 of 4 1.88None
Whole fly1 ± 10 of 4

Looking for FBgn0261633. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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