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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261641 through 18771 annotations produced 2 hits



():

Annotation Number : CG31367
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051367
Gbrowse : chr3R:2187385-2189849 (-) // 100.0 //
Probeset : 1637665_at
Accessions : protein= NP_731075;, nucleotide= NM_169138;
Pathway : via spliceosome // inferred by curator"
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0051367.
BDGP gene expression has embryonic in situ data for CG31367: 4 pix of staining in 1 body parts.
VDRC has 6 RNAi stocks for FBgn0051367 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain323 194 of 4 3.40Up
Head78 34 of 4 0.80Down
Eye114 24 of 4 1.19Up
Thoracicoabdominal ganglion276 134 of 4 2.90Up
Salivary gland111 74 of 4 1.16None
Crop97 24 of 4 1.00None
Midgut72 44 of 4 0.80Down
Tubule153 44 of 4 1.60Up
Hindgut104 14 of 4 1.10None
Heart58 34 of 4 0.61Down
Fat body65 84 of 4 0.68Down
Ovary201 44 of 4 2.10Up
Testis72 24 of 4 0.70Down
Male accessory glands170 64 of 4 1.80Up
Virgin spermatheca101 54 of 4 1.05None
Mated spermatheca113 74 of 4 1.17None
Adult carcass58 34 of 4 0.60Down
Larval CNS433 514 of 4 4.49Up
Larval Salivary gland201 64 of 4 2.08Up
Larval midgut62 34 of 4 0.64Down
Larval tubule90 44 of 4 0.90None
Larval hindgut112 54 of 4 1.17None
Larval fat body72 84 of 4 0.70None
Larval trachea165 44 of 4 1.72Up
Larval carcass137 64 of 4 1.42Up
S2 cells (growing)158 44 of 4 1.64Up
Whole fly96 54 of 4



():

Annotation Number : CG33097
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053097
Gbrowse : chr3R:2190208-2194010 (-) // 100.0 //
Probeset : 1625578_at
Accessions : protein= NP_001036683; /// NP_788585;, nucleotide= NM_001043218; /// NM_176408;
Pathway : via spliceosome // inferred by curator"
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0053097.
BDGP gene expression has embryonic in situ data for CG33097: 20 pix of staining in 28 body parts.
BioGrid reports that CG33097 interacts with CG3918 .
VDRC has 6 RNAi stocks for FBgn0053097 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 24 of 4 5.10Up
Head10 12 of 4 0.90None
Eye14 24 of 4 1.16None
Thoracicoabdominal ganglion50 74 of 4 4.10Up
Salivary gland11 40 of 4 0.98None
Crop18 24 of 4 1.50None
Midgut13 04 of 4 1.10None
Tubule10 01 of 4 0.80Down
Hindgut24 14 of 4 2.00Up
Heart12 03 of 4 0.99None
Fat body8 00 of 4 0.70None
Ovary26 14 of 4 2.10Up
Testis26 14 of 4 2.20Up
Male accessory glands30 24 of 4 2.50Up
Virgin spermatheca6 02 of 4 0.56None
Mated spermatheca7 10 of 4 0.58None
Adult carcass12 31 of 4 1.10None
Larval CNS39 24 of 4 3.23Up
Larval Salivary gland18 14 of 4 1.54None
Larval midgut7 11 of 4 0.57None
Larval tubule17 14 of 4 1.40None
Larval hindgut10 04 of 4 0.87None
Larval fat body13 12 of 4 1.10None
Larval trachea24 34 of 4 2.00Up
Larval carcass13 14 of 4 1.09None
S2 cells (growing)50 44 of 4 4.13Up
Whole fly12 14 of 4

Looking for FBgn0261641. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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