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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261648 through 18771 annotations produced 1 hits



():

Annotation Number : CG6464
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004579
Gbrowse : chr2L:11434310-11445603 (-) // 100.0 //
Probeset : 1627881_at
Accessions : protein= NP_723670;, nucleotide= NM_164966;
Pathway : open tracheal system // traceable author statement /// 0007438 // oenocyte development // inferred from mutant phenotyp
Interpro : open tracheal system // inferred from mutant phenotype /// 0035310 // notum cell fate specification // inferred from mu
FlyMine data for FBgn0004579.
Homophila reports that CG6464 is a close match (4e-11) to human gene ZBTB16;ZNF145;PLZF (NP_005997), a gene associated with Leukemia, acute promyelocytic, PL2F/RARA type (3).
BioGrid reports that CG6464 interacts with CG9099 CG11579 CG4717 CG32443 CG4531 CG3895 CG18412 CG10334 .
VDRC has 3 RNAi stocks for FBgn0004579 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 34 of 4 1.80Up
Head32 24 of 4 1.10None
Eye86 74 of 4 2.86Up
Thoracicoabdominal ganglion57 04 of 4 1.90Up
Salivary gland9 41 of 4 0.32Down
Crop5 21 of 4 0.20Down
Midgut2 10 of 4 0.10Down
Tubule3 00 of 4 0.10Down
Hindgut34 24 of 4 1.10None
Heart222 284 of 4 7.29Up
Fat body225 224 of 4 7.41Up
Ovary1 00 of 4 0.00Down
Testis11 04 of 4 0.40Down
Male accessory glands3 20 of 4 0.10Down
Virgin spermatheca2 00 of 4 0.08Down
Mated spermatheca5 21 of 4 0.19Down
Adult carcass125 74 of 4 4.10Up
Larval CNS195 244 of 4 6.43Up
Larval Salivary gland2 10 of 4 0.07Down
Larval midgut4 10 of 4 0.15Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut27 14 of 4 0.91None
Larval fat body1 00 of 4 0.00Down
Larval trachea377 124 of 412.40Up
Larval carcass67 44 of 4 2.20Up
S2 cells (growing)0 00 of 4 0.02Down
Whole fly30 44 of 4

Looking for FBgn0261648. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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