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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261649 through 18771 annotations produced 3 hits



():

Annotation Number : CG31247
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038554
Gbrowse : chr3R:13678095-13696493 (+) // 100.0 //
Probeset : 1637201_s_at
Accessions : protein= NP_732278; /// NP_788686; /// NP_788687; /// NP_788688;, nucleotide= NM_169780; /// NM_176509; /// NM_176510; /// NM_176511;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038554.
BioGrid reports that CG31247 interacts with CG3231 CG6231 CG4771 CG6202 CG6819 CG7001 CG8170 CG9527 CG9553 Dmel CG17162 .
VDRC has 4 RNAi stocks for FBgn0038554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 24 of 4 2.40Up
Head15 12 of 4 1.70Up
Eye8 20 of 4 0.88None
Thoracicoabdominal ganglion20 33 of 4 2.20Up
Salivary gland11 40 of 4 1.23None
Crop4 10 of 4 0.50None
Midgut12 21 of 4 1.40None
Tubule4 00 of 4 0.40Down
Hindgut7 10 of 4 0.80None
Heart4 10 of 4 0.44None
Fat body4 30 of 4 0.52None
Ovary5 00 of 4 0.60None
Testis25 14 of 4 2.70Up
Male accessory glands14 10 of 4 1.50None
Virgin spermatheca3 00 of 4 0.34Down
Mated spermatheca4 20 of 4 0.44None
Adult carcass6 10 of 4 0.70None
Larval CNS20 14 of 4 2.23Up
Larval Salivary gland11 30 of 4 1.22None
Larval midgut15 20 of 4 1.68None
Larval tubule9 00 of 4 1.00None
Larval hindgut5 10 of 4 0.62None
Larval fat body8 30 of 4 0.90None
Larval trachea4 30 of 4 0.53None
Larval carcass7 20 of 4 0.80None
S2 cells (growing)7 10 of 4 0.78None
Whole fly9 11 of 4



():

Annotation Number : CG31247
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038554
Gbrowse : chr3R:13678095-13693223 (+) // 99.65 //
Probeset : 1636047_s_at
Accessions : protein= NP_732278; /// NP_788686; /// NP_788687; /// NP_788688;, nucleotide= NM_169780; /// NM_176509; /// NM_176510; /// NM_176511;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038554.
BioGrid reports that CG31247 interacts with CG3231 CG6231 CG4771 CG6202 CG6819 CG7001 CG8170 CG9527 CG9553 Dmel CG17162 .
VDRC has 4 RNAi stocks for FBgn0038554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 11 of 4 4.60Up
Head6 20 of 4 1.50None
Eye8 11 of 4 1.78None
Thoracicoabdominal ganglion13 10 of 4 2.90Up
Salivary gland21 60 of 4 4.69None
Crop7 10 of 4 1.70None
Midgut5 10 of 4 1.20None
Tubule11 11 of 4 2.50Up
Hindgut9 00 of 4 2.00Up
Heart1 00 of 4 0.28None
Fat body12 40 of 4 2.72Up
Ovary4 10 of 4 0.90None
Testis2 00 of 4 0.40None
Male accessory glands19 60 of 4 4.20None
Virgin spermatheca15 12 of 4 3.31Up
Mated spermatheca23 63 of 4 5.05Up
Adult carcass15 10 of 4 3.30Up
Larval CNS10 10 of 4 2.18Up
Larval Salivary gland16 50 of 4 3.62None
Larval midgut16 50 of 4 3.52None
Larval tubule8 10 of 4 1.80None
Larval hindgut12 10 of 4 2.60Up
Larval fat body3 00 of 4 0.80None
Larval trachea9 30 of 4 2.08None
Larval carcass13 40 of 4 2.99None
S2 cells (growing)3 10 of 4 0.84None
Whole fly4 10 of 4



():

Annotation Number : S.C3R001870
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038554
Gbrowse : chr3R:13673047-13677925 (+) // 100.0 //
Probeset : 1641243_at
Accessions : protein= NP_732278; /// NP_788686; /// NP_788687; /// NP_788688;, nucleotide= NM_169780; /// NM_176509; /// NM_176510; /// NM_176511;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038554.
VDRC has 4 RNAi stocks for FBgn0038554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 12 of 4 7.40None
Head0 00 of 4 0.80None
Eye1 00 of 4 2.09None
Thoracicoabdominal ganglion2 00 of 4 2.80None
Salivary gland8 32 of 410.06None
Crop1 00 of 4 2.10None
Midgut1 00 of 4 1.90None
Tubule2 00 of 4 2.90Up
Hindgut0 00 of 4 1.00None
Heart2 00 of 4 2.34None
Fat body3 11 of 4 3.60None
Ovary1 00 of 4 1.70None
Testis1 00 of 4 1.80None
Male accessory glands2 10 of 4 2.90None
Virgin spermatheca2 00 of 4 3.17None
Mated spermatheca1 00 of 4 1.46None
Adult carcass2 10 of 4 2.70None
Larval CNS2 00 of 4 2.74None
Larval Salivary gland3 00 of 4 3.43None
Larval midgut2 10 of 4 2.60None
Larval tubule2 00 of 4 2.50None
Larval hindgut0 00 of 4 0.77None
Larval fat body1 00 of 4 1.20None
Larval trachea0 00 of 4 0.71None
Larval carcass1 00 of 4 1.43None
S2 cells (growing)1 00 of 4 1.49None
Whole fly0 00 of 4

Looking for FBgn0261649. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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