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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261671 through 18771 annotations produced 3 hits



():

Annotation Number : CG15134
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032621
Gbrowse : chr2L:16902528-16908144 (+) // 100.0 //
Probeset : 1639590_at
Accessions : protein= NP_001137831; /// NP_609823;, nucleotide= NM_001144359; /// NM_135979;
FlyMine data for FBgn0032621.
VDRC has 6 RNAi stocks for FBgn0032621 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 02 of 4 0.60Down
Head12 12 of 4 1.00None
Eye4 11 of 4 0.36Down
Thoracicoabdominal ganglion4 10 of 4 0.40Down
Salivary gland28 80 of 4 2.38None
Crop9 20 of 4 0.80None
Midgut15 21 of 4 1.30None
Tubule8 10 of 4 0.70Down
Hindgut12 12 of 4 1.10None
Heart3 10 of 4 0.25Down
Fat body15 70 of 4 1.30None
Ovary9 03 of 4 0.70Down
Testis8 11 of 4 0.70None
Male accessory glands9 21 of 4 0.80None
Virgin spermatheca10 01 of 4 0.88None
Mated spermatheca10 02 of 4 0.91None
Adult carcass16 20 of 4 1.40None
Larval CNS6 31 of 4 0.55None
Larval Salivary gland8 30 of 4 0.71None
Larval midgut20 40 of 4 1.69None
Larval tubule9 22 of 4 0.80None
Larval hindgut8 12 of 4 0.67None
Larval fat body21 23 of 4 1.80Up
Larval trachea10 32 of 4 0.90None
Larval carcass12 10 of 4 1.08None
S2 cells (growing)16 14 of 4 1.37Up
Whole fly12 02 of 4



():

Annotation Number : CG15133
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260757
Gbrowse : chr2L:16889002-16898072 (+) // 100.0 //
Probeset : 1624822_at
Accessions : protein= NP_609821;, nucleotide= NM_135977;
FlyMine data for FBgn0260757.
VDRC has 6 RNAi stocks for FBgn0260757 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 2.80None
Head1 00 of 4 0.90None
Eye4 20 of 4 2.77None
Thoracicoabdominal ganglion5 10 of 4 3.20None
Salivary gland10 20 of 4 6.77None
Crop5 20 of 4 3.40None
Midgut3 00 of 4 2.00None
Tubule2 00 of 4 1.60None
Hindgut2 10 of 4 1.80None
Heart4 10 of 4 2.87None
Fat body5 30 of 4 3.24None
Ovary2 00 of 4 1.30None
Testis4 11 of 4 3.20None
Male accessory glands3 10 of 4 2.00None
Virgin spermatheca1 00 of 4 1.18None
Mated spermatheca2 00 of 4 1.55None
Adult carcass7 10 of 4 4.50Up
Larval CNS2 10 of 4 1.44None
Larval Salivary gland4 10 of 4 2.63None
Larval midgut2 00 of 4 1.71None
Larval tubule2 10 of 4 1.70None
Larval hindgut2 00 of 4 1.26None
Larval fat body6 10 of 4 4.10None
Larval trachea2 20 of 4 1.39None
Larval carcass3 00 of 4 2.00None
S2 cells (growing)1 00 of 4 1.00None
Whole fly1 00 of 4



():

Annotation Number : CG4841
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032622
Gbrowse : chr2L:16910677-16917052 (+) // 100.0 //
Probeset : 1640750_at
Accessions : protein= NP_609824;, nucleotide= NM_135980;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032622.
VDRC has 6 RNAi stocks for FBgn0032622 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain379 64 of 4 4.20Up
Head133 44 of 4 1.50Up
Eye183 104 of 4 2.04Up
Thoracicoabdominal ganglion332 84 of 4 3.70Up
Salivary gland171 54 of 4 1.91Up
Crop126 34 of 4 1.40Up
Midgut201 84 of 4 2.20Up
Tubule97 24 of 4 1.10Up
Hindgut119 54 of 4 1.30Up
Heart171 64 of 4 1.91Up
Fat body217 324 of 4 2.43Up
Ovary190 54 of 4 2.10Up
Testis42 44 of 4 0.50Down
Male accessory glands87 34 of 4 1.00None
Virgin spermatheca174 134 of 4 1.94Up
Mated spermatheca192 124 of 4 2.15Up
Adult carcass131 104 of 4 1.50Up
Larval CNS294 84 of 4 3.28Up
Larval Salivary gland152 44 of 4 1.70Up
Larval midgut246 164 of 4 2.75Up
Larval tubule110 34 of 4 1.20Up
Larval hindgut190 104 of 4 2.12Up
Larval fat body527 484 of 4 5.90Up
Larval trachea138 124 of 4 1.54Up
Larval carcass164 94 of 4 1.83Up
S2 cells (growing)165 64 of 4 1.85Up
Whole fly89 24 of 4

Looking for FBgn0261671. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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