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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261673 through 18771 annotations produced 1 hits



():

Annotation Number : CG8776
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033764
Gbrowse : chr2R:8547086-8595434 (-) // 100.0 //
Probeset : 1632530_s_at
Accessions : protein= NP_001163128; /// NP_610808; /// NP_725208; /// NP_725209; /// NP_725210; /// NP_725211;, nucleotide= NM_001169657; /// NM_136964; /// NM_165934; /// NM_165935; /// NM_165936; /// NM_165937;
Interpro : 0008805 // carbon-monoxide oxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activ
FlyMine data for FBgn0033764.
BDGP gene expression has embryonic in situ data for CG8776: 33 pix of staining in 20 body parts.
VDRC has 2 RNAi stocks for FBgn0033764 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain396 ± 124 of 4 2.10Up
Head325 ± 74 of 4 1.80Up
Eye487 ± 74 of 4 2.64Up
Thoracicoabdominal ganglion251 ± 114 of 4 1.40Up
Salivary gland2064 ± 854 of 411.19Up
Crop97 ± 54 of 4 0.50Down
Midgut7 ± 21 of 4 0.00Down
Tubule3937 ± 564 of 421.30Up
Hindgut552 ± 54 of 4 3.00Up
Heart35 ± 24 of 4 0.19Down
Fat body49 ± 54 of 4 0.27Down
Ovary25 ± 34 of 4 0.10Down
Testis281 ± 94 of 4 1.50Up
Male accessory glands12 ± 41 of 4 0.10Down
Virgin spermatheca19 ± 44 of 4 0.10Down
Mated spermatheca30 ± 34 of 4 0.16Down
Adult carcass57 ± 64 of 4 0.30Down
Larval CNS421 ± 154 of 4 2.28Up
Larval Salivary gland416 ± 284 of 4 2.26Up
Larval midgut11 ± 20 of 4 0.06Down
Larval tubule670 ± 254 of 4 3.60Up
Larval hindgut480 ± 194 of 4 2.60Up
Larval fat body354 ± 124 of 4 1.90Up
Larval trachea19 ± 44 of 4 0.11Down
Larval carcass204 ± 274 of 4 1.11None
S2 cells (growing)239 ± 84 of 4 1.30Up
Whole fly184 ± 34 of 4

Looking for FBgn0261673. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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