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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261680 through 18771 annotations produced 1 hits



():

Annotation Number : CG31392
Flybase ID : FBgn0051392
Gbrowse : chr3R:11173831-11176060 (+) // 100.0 //
Probeset : 1624188_at
Accessions : protein= NP_732017;, nucleotide= NM_169648;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0051392.
Homophila reports that CG31392 is a close match (3e-14) to human gene GFI1;ZNF163 (NP_005254), a gene associated with Neutropenia, nonimmune chronic idiopathic, of adults, 607847 (3);Neutropenia, severe congenital, 202700 (3).
BioGrid reports that CG31392 interacts with CG9163 CG9511 .
VDRC has 3 RNAi stocks for FBgn0051392 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 34 of 4 0.80None
Head23 14 of 4 0.60Down
Eye25 14 of 4 0.65None
Thoracicoabdominal ganglion27 04 of 4 0.70None
Salivary gland24 23 of 4 0.63Down
Crop16 13 of 4 0.40Down
Midgut30 42 of 4 0.80None
Tubule16 13 of 4 0.40Down
Hindgut17 23 of 4 0.50Down
Heart17 14 of 4 0.44Down
Fat body14 62 of 4 0.38Down
Ovary62 34 of 4 1.60Up
Testis12 11 of 4 0.30Down
Male accessory glands16 22 of 4 0.40Down
Virgin spermatheca13 13 of 4 0.36Down
Mated spermatheca12 22 of 4 0.33Down
Adult carcass23 24 of 4 0.60Down
Larval CNS35 24 of 4 0.92None
Larval Salivary gland22 12 of 4 0.59Down
Larval midgut20 11 of 4 0.52Down
Larval tubule26 14 of 4 0.70None
Larval hindgut20 14 of 4 0.54Down
Larval fat body20 31 of 4 0.50Down
Larval trachea29 54 of 4 0.76None
Larval carcass34 44 of 4 0.89None
S2 cells (growing)26 23 of 4 0.69None
Whole fly38 44 of 4

Looking for FBgn0261680. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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