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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261683 through 18771 annotations produced 1 hits



():

Annotation Number : CG9227
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031783
Gbrowse : chr2L:6127871-6130659 (-) // 99.77 //
Probeset : 1625411_at
Accessions : protein= NP_608998;, nucleotide= NM_135154;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031783.
VDRC has 3 RNAi stocks for FBgn0031783 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.20Down
Head9 ± 31 of 4 0.70None
Eye6 ± 30 of 4 0.46None
Thoracicoabdominal ganglion5 ± 10 of 4 0.40Down
Salivary gland7 ± 10 of 4 0.49Down
Crop5 ± 10 of 4 0.40Down
Midgut11 ± 20 of 4 0.80None
Tubule3 ± 00 of 4 0.20Down
Hindgut5 ± 10 of 4 0.40Down
Heart4 ± 10 of 4 0.31Down
Fat body4 ± 30 of 4 0.33Down
Ovary4 ± 10 of 4 0.30Down
Testis76 ± 04 of 4 5.40Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.38Down
Mated spermatheca2 ± 10 of 4 0.20Down
Adult carcass14 ± 22 of 4 1.00None
Larval CNS3 ± 10 of 4 0.25Down
Larval Salivary gland5 ± 10 of 4 0.39Down
Larval midgut9 ± 20 of 4 0.67None
Larval tubule6 ± 20 of 4 0.50None
Larval hindgut4 ± 20 of 4 0.32Down
Larval fat body29 ± 43 of 4 2.00Up
Larval trachea2 ± 10 of 4 0.19Down
Larval carcass5 ± 10 of 4 0.42Down
S2 cells (growing)2 ± 10 of 4 0.20Down
Whole fly14 ± 03 of 4

Looking for FBgn0261683. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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