FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261698 through 18771 annotations produced 4 hits

():

Annotation Number : S.C2R000713
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085392
Gbrowse : chr2R:6227627-6231535 (-) // 100.0 //
Probeset : 1635147_at
Accessions : protein= NP_001097258; /// NP_001097259;, nucleotide= NM_001103788; /// NM_001103789;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0085392.
VDRC has 3 RNAi stocks for FBgn0085392 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.50	None
Head	4 ± 0	0 of 4	0.80	None
Eye	3 ± 0	0 of 4	0.58	None
Thoracicoabdominal ganglion	6 ± 2	1 of 4	1.20	None
Salivary gland	10 ± 3	2 of 4	1.99	None
Crop	6 ± 1	1 of 4	1.20	None
Midgut	4 ± 1	1 of 4	0.90	None
Tubule	4 ± 0	0 of 4	0.90	Down
Hindgut	3 ± 1	0 of 4	0.70	None
Heart	4 ± 2	0 of 4	0.77	None
Fat body	8 ± 3	2 of 4	1.50	None
Ovary	1 ± 0	1 of 4	0.40	Down
Testis	2 ± 1	1 of 4	0.40	None
Male accessory glands	6 ± 2	0 of 4	1.20	None
Virgin spermatheca	4 ± 1	1 of 4	0.80	None
Mated spermatheca	4 ± 1	0 of 4	0.91	None
Adult carcass	7 ± 2	0 of 4	1.40	None
Larval CNS	3 ± 2	3 of 4	0.66	None
Larval Salivary gland	6 ± 2	1 of 4	1.14	None
Larval midgut	4 ± 1	1 of 4	0.77	None
Larval tubule	3 ± 1	0 of 4	0.70	None
Larval hindgut	3 ± 0	2 of 4	0.68	None
Larval fat body	5 ± 1	0 of 4	1.00	None
Larval trachea	4 ± 2	0 of 4	0.83	None
Larval carcass	4 ± 0	0 of 4	0.85	None
S2 cells (growing)	1 ± 0	0 of 4	0.34	Down
Whole fly	5 ± 1	1 of 4

():

Annotation Number : CG12904
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085392
Gbrowse : chr2R:6211285-6227020 (-) // 100.0 //
Probeset : 1629587_at
Accessions : protein= NP_001097258; /// NP_001097259;, nucleotide= NM_001103788; /// NM_001103789;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0085392.
Homophila reports that CG12904 is a close match (5e-22) to human gene KCNMA1;SLO (NP_002238), a gene associated with Generalized epilepsy and paroxysmal dyskinesia, 609446 (3).
VDRC has 3 RNAi stocks for FBgn0085392 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	138 ± 6	4 of 4	9.90	Up
Head	24 ± 2	1 of 4	1.80	Up
Eye	12 ± 3	1 of 4	0.92	None
Thoracicoabdominal ganglion	83 ± 8	4 of 4	6.00	Up
Salivary gland	4 ± 1	0 of 4	0.29	Down
Crop	5 ± 1	0 of 4	0.40	Down
Midgut	1 ± 0	0 of 4	0.10	Down
Tubule	1 ± 0	0 of 4	0.10	Down
Hindgut	3 ± 1	0 of 4	0.20	Down
Heart	2 ± 0	0 of 4	0.16	Down
Fat body	4 ± 3	0 of 4	0.28	Down
Ovary	19 ± 1	3 of 4	1.40	None
Testis	3 ± 0	0 of 4	0.20	Down
Male accessory glands	73 ± 10	4 of 4	5.20	Up
Virgin spermatheca	3 ± 1	0 of 4	0.22	Down
Mated spermatheca	1 ± 1	0 of 4	0.14	Down
Adult carcass	7 ± 3	0 of 4	0.50	None
Larval CNS	28 ± 3	4 of 4	2.03	Up
Larval Salivary gland	1 ± 0	0 of 4	0.09	Down
Larval midgut	3 ± 1	0 of 4	0.26	Down
Larval tubule	1 ± 0	0 of 4	0.10	Down
Larval hindgut	3 ± 1	0 of 4	0.27	Down
Larval fat body	4 ± 2	0 of 4	0.30	Down
Larval trachea	1 ± 0	0 of 4	0.10	Down
Larval carcass	4 ± 1	0 of 4	0.35	Down
S2 cells (growing)	3 ± 1	0 of 4	0.21	Down
Whole fly	14 ± 2	1 of 4

():

Annotation Number : CG12897
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033517
Gbrowse : chr2R:6299736-6300397 (-) // 100.0 //
Probeset : 1626648_at
Accessions : protein= NP_610582;, nucleotide= NM_136738;
FlyMine data for FBgn0033517.
VDRC has 3 RNAi stocks for FBgn0033517 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 1	0 of 4	0.90	None
Head	6 ± 2	0 of 4	0.80	None
Eye	0 ± 0	0 of 4	0.09	Down
Thoracicoabdominal ganglion	9 ± 2	0 of 4	1.20	None
Salivary gland	11 ± 3	0 of 4	1.39	None
Crop	6 ± 0	0 of 4	0.80	None
Midgut	4 ± 2	0 of 4	0.60	None
Tubule	5 ± 1	0 of 4	0.70	Down
Hindgut	7 ± 2	0 of 4	0.90	None
Heart	4 ± 1	0 of 4	0.52	Down
Fat body	12 ± 5	0 of 4	1.45	None
Ovary	8 ± 1	0 of 4	1.00	None
Testis	4 ± 1	0 of 4	0.50	None
Male accessory glands	11 ± 1	0 of 4	1.40	None
Virgin spermatheca	3 ± 1	0 of 4	0.39	Down
Mated spermatheca	5 ± 2	0 of 4	0.70	None
Adult carcass	10 ± 4	0 of 4	1.20	None
Larval CNS	3 ± 1	0 of 4	0.36	Down
Larval Salivary gland	8 ± 1	0 of 4	0.94	None
Larval midgut	8 ± 1	0 of 4	1.01	None
Larval tubule	8 ± 1	0 of 4	1.00	None
Larval hindgut	8 ± 2	0 of 4	0.94	None
Larval fat body	8 ± 1	0 of 4	1.00	None
Larval trachea	1 ± 1	0 of 4	0.19	Down
Larval carcass	9 ± 1	0 of 4	1.16	None
S2 cells (growing)	4 ± 1	0 of 4	0.49	Down
Whole fly	8 ± 0	0 of 4

():

Annotation Number : CG12899
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085392
Gbrowse : chr2R:6275634-6275919 (-) // 100.0 //
Probeset : 1637431_at
Accessions : protein= NP_001097258; /// NP_001097259;, nucleotide= NM_001103788; /// NM_001103789;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0085392.
VDRC has 3 RNAi stocks for FBgn0085392 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	13 ± 1	3 of 4	5.60	Up
Head	3 ± 1	0 of 4	1.30	None
Eye	2 ± 1	0 of 4	1.19	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	1.10	None
Salivary gland	4 ± 3	0 of 4	1.96	None
Crop	2 ± 1	0 of 4	1.00	None
Midgut	1 ± 0	0 of 4	0.70	None
Tubule	5 ± 0	0 of 4	2.00	Up
Hindgut	2 ± 1	0 of 4	0.90	None
Heart	1 ± 0	0 of 4	0.52	None
Fat body	7 ± 4	0 of 4	2.92	None
Ovary	2 ± 0	0 of 4	1.00	None
Testis	5 ± 0	0 of 4	2.10	None
Male accessory glands	1 ± 0	0 of 4	0.50	None
Virgin spermatheca	4 ± 2	0 of 4	1.85	None
Mated spermatheca	2 ± 1	0 of 4	1.12	None
Adult carcass	8 ± 3	0 of 4	3.30	None
Larval CNS	5 ± 1	0 of 4	2.39	None
Larval Salivary gland	5 ± 1	0 of 4	2.35	None
Larval midgut	5 ± 2	0 of 4	2.31	None
Larval tubule	3 ± 1	0 of 4	1.50	None
Larval hindgut	3 ± 1	0 of 4	1.19	None
Larval fat body	2 ± 1	0 of 4	1.10	None
Larval trachea	2 ± 1	0 of 4	0.99	None
Larval carcass	5 ± 2	0 of 4	2.21	None
S2 cells (growing)	4 ± 1	0 of 4	1.75	None
Whole fly	2 ± 1	0 of 4

Looking for FBgn0261698. 4 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720