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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261704 through 18771 annotations produced 1 hits



(CG2217):

Annotation Number : CG2217
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027544
Gbrowse : chr3R:26244485-26248693 (-) // 100.0 //
Probeset : 1636293_at
Accessions : protein= NP_651787;, nucleotide= NM_143530;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0027544.
BioGrid reports that CG2217 interacts with CG9603 CG3099 CG8361 .
VDRC has 3 RNAi stocks for FBgn0027544 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain589 ± 144 of 416.80Up
Head103 ± 104 of 4 3.00Up
Eye31 ± 34 of 4 0.91None
Thoracicoabdominal ganglion520 ± 264 of 414.80Up
Salivary gland17 ± 31 of 4 0.50Down
Crop8 ± 00 of 4 0.30Down
Midgut7 ± 11 of 4 0.20Down
Tubule17 ± 51 of 4 0.50Down
Hindgut19 ± 14 of 4 0.60None
Heart156 ± 484 of 4 4.47None
Fat body340 ± 1354 of 4 9.69Up
Ovary1 ± 00 of 4 0.00Down
Testis46 ± 54 of 4 1.30None
Male accessory glands16 ± 13 of 4 0.50Down
Virgin spermatheca161 ± 174 of 4 4.60Up
Mated spermatheca210 ± 434 of 4 5.99Up
Adult carcass73 ± 24 of 4 2.10Up
Larval CNS76 ± 104 of 4 2.19Up
Larval Salivary gland1280 ± 1934 of 436.46Up
Larval midgut6 ± 10 of 4 0.18Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut11 ± 02 of 4 0.32Down
Larval fat body68 ± 114 of 4 1.90None
Larval trachea11 ± 91 of 4 0.31Down
Larval carcass12 ± 22 of 4 0.34Down
S2 cells (growing)30 ± 24 of 4 0.86None
Whole fly35 ± 54 of 4

Looking for FBgn0261704. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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