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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261710 through 18771 annotations produced 1 hits



():

Annotation Number : CG17255
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030205
Gbrowse : chrX:10357667-10367618 (-) // 99.96 //
Probeset : 1626323_s_at
Accessions : protein= NP_572631; /// NP_727425;, nucleotide= NM_132403; /// NM_167231;
FlyMine data for FBgn0030205.
BioGrid reports that CG17255 interacts with CG3151 .
VDRC has 2 RNAi stocks for FBgn0030205 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain450 ± 164 of 4 1.40None
Head179 ± 84 of 4 0.60Down
Eye206 ± 204 of 4 0.64Down
Thoracicoabdominal ganglion296 ± 254 of 4 0.90None
Salivary gland330 ± 244 of 4 1.02None
Crop256 ± 64 of 4 0.80Down
Midgut180 ± 64 of 4 0.60Down
Tubule209 ± 64 of 4 0.60Down
Hindgut213 ± 94 of 4 0.70Down
Heart352 ± 104 of 4 1.09None
Fat body220 ± 234 of 4 0.68Down
Ovary741 ± 134 of 4 2.30Up
Testis56 ± 44 of 4 0.20Down
Male accessory glands261 ± 34 of 4 0.80Down
Virgin spermatheca279 ± 184 of 4 0.86None
Mated spermatheca282 ± 94 of 4 0.87None
Adult carcass158 ± 94 of 4 0.50Down
Larval CNS817 ± 804 of 4 2.52Up
Larval Salivary gland469 ± 184 of 4 1.45Up
Larval midgut248 ± 144 of 4 0.77Down
Larval tubule397 ± 264 of 4 1.20None
Larval hindgut416 ± 184 of 4 1.28Up
Larval fat body307 ± 264 of 4 0.90None
Larval trachea465 ± 624 of 4 1.44Up
Larval carcass417 ± 294 of 4 1.29Up
S2 cells (growing)385 ± 94 of 4 1.19Up
Whole fly323 ± 174 of 4

Looking for FBgn0261710. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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