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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261722 through 18771 annotations produced 3 hits



():

Annotation Number : CG6151
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036533
Gbrowse : chr3L:15805858-15809509 (-) // 100.0 //
Probeset : 1637061_at
Accessions : protein= NP_648804; /// NP_730071; /// NP_730072;, nucleotide= NM_140547; /// NM_168632; /// NM_168633;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferr
FlyMine data for FBgn0036533.
BDGP gene expression has embryonic in situ data for CG6151: 13 pix of staining in 7 body parts.
VDRC has 2 RNAi stocks for FBgn0036533 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain157 ± 44 of 4 6.30Up
Head53 ± 153 of 4 2.10None
Eye6 ± 10 of 4 0.27Down
Thoracicoabdominal ganglion65 ± 114 of 4 2.60Up
Salivary gland5 ± 30 of 4 0.22Down
Crop4 ± 30 of 4 0.20Down
Midgut3 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.10Down
Fat body1 ± 10 of 4 0.06Down
Ovary32 ± 34 of 4 1.30None
Testis1 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.03Down
Mated spermatheca2 ± 10 of 4 0.11Down
Adult carcass8 ± 40 of 4 0.30Down
Larval CNS42 ± 64 of 4 1.71Up
Larval Salivary gland1 ± 00 of 4 0.04Down
Larval midgut2 ± 00 of 4 0.09Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.04Down
Larval fat body5 ± 20 of 4 0.20Down
Larval trachea2 ± 10 of 4 0.09Down
Larval carcass2 ± 10 of 4 0.10Down
S2 cells (growing)8 ± 20 of 4 0.33Down
Whole fly24 ± 43 of 4



():

Annotation Number : CG6151
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036533
Gbrowse : chr3L:15805858-15809509 (-) // 100.0 //
Probeset : 1637808_a_at
Accessions : protein= NP_648804; /// NP_730071; /// NP_730072;, nucleotide= NM_140547; /// NM_168632; /// NM_168633;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferr
FlyMine data for FBgn0036533.
BDGP gene expression has embryonic in situ data for CG6151: 13 pix of staining in 7 body parts.
VDRC has 2 RNAi stocks for FBgn0036533 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain196 ± 94 of 4 2.30Up
Head102 ± 144 of 4 1.20None
Eye90 ± 24 of 4 1.04None
Thoracicoabdominal ganglion113 ± 124 of 4 1.30None
Salivary gland271 ± 84 of 4 3.12Up
Crop92 ± 104 of 4 1.10None
Midgut154 ± 54 of 4 1.80Up
Tubule64 ± 34 of 4 0.70Down
Hindgut124 ± 24 of 4 1.40None
Heart174 ± 174 of 4 2.01Up
Fat body83 ± 234 of 4 0.96None
Ovary147 ± 54 of 4 1.70Up
Testis33 ± 04 of 4 0.40Down
Male accessory glands169 ± 74 of 4 1.90Up
Virgin spermatheca26 ± 14 of 4 0.30Down
Mated spermatheca27 ± 34 of 4 0.32Down
Adult carcass90 ± 24 of 4 1.00None
Larval CNS66 ± 64 of 4 0.76None
Larval Salivary gland242 ± 564 of 4 2.79None
Larval midgut104 ± 44 of 4 1.20None
Larval tubule208 ± 44 of 4 2.40Up
Larval hindgut97 ± 44 of 4 1.12None
Larval fat body200 ± 204 of 4 2.30Up
Larval trachea101 ± 154 of 4 1.16None
Larval carcass65 ± 34 of 4 0.75None
S2 cells (growing)181 ± 34 of 4 2.09Up
Whole fly87 ± 134 of 4



():

Annotation Number : CG6151
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036533
Gbrowse : chr3L:15803212-15809509 (-) // 100.0 //
Probeset : 1628390_at
Accessions : protein= NP_648804; /// NP_730071; /// NP_730072;, nucleotide= NM_140547; /// NM_168632; /// NM_168633;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferr
FlyMine data for FBgn0036533.
BDGP gene expression has embryonic in situ data for CG6151: 13 pix of staining in 7 body parts.
VDRC has 2 RNAi stocks for FBgn0036533 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1263 ± 214 of 4 3.90Up
Head656 ± 454 of 4 2.00Up
Eye571 ± 164 of 4 1.77Up
Thoracicoabdominal ganglion1114 ± 244 of 4 3.40Up
Salivary gland925 ± 464 of 4 2.86Up
Crop310 ± 104 of 4 1.00None
Midgut405 ± 124 of 4 1.30Up
Tubule530 ± 164 of 4 1.60Up
Hindgut299 ± 24 of 4 0.90None
Heart522 ± 104 of 4 1.61Up
Fat body485 ± 164 of 4 1.50Up
Ovary536 ± 154 of 4 1.70Up
Testis120 ± 74 of 4 0.40Down
Male accessory glands808 ± 274 of 4 2.50Up
Virgin spermatheca413 ± 274 of 4 1.28Up
Mated spermatheca447 ± 224 of 4 1.38Up
Adult carcass223 ± 84 of 4 0.70Down
Larval CNS808 ± 464 of 4 2.50Up
Larval Salivary gland1318 ± 484 of 4 4.08Up
Larval midgut684 ± 154 of 4 2.12Up
Larval tubule573 ± 114 of 4 1.80Up
Larval hindgut525 ± 74 of 4 1.62Up
Larval fat body570 ± 454 of 4 1.80Up
Larval trachea350 ± 244 of 4 1.08None
Larval carcass351 ± 104 of 4 1.09None
S2 cells (growing)378 ± 134 of 4 1.17Up
Whole fly323 ± 104 of 4

Looking for FBgn0261722. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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