Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261786 through 18771 annotations produced 1 hits



():

Annotation Number : CG5360
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034873
Gbrowse : chr2R:19411380-19415788 (+) // 100.0 //
Probeset : 1628978_at
Accessions : protein= NP_611803;, nucleotide= NM_137959;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034873.
BioGrid reports that CG5360 interacts with CG6577 CG7379 .
VDRC has 6 RNAi stocks for FBgn0034873 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 44 of 4 0.50Down
Head83 14 of 4 0.40Down
Eye52 24 of 4 0.24Down
Thoracicoabdominal ganglion73 34 of 4 0.30Down
Salivary gland125 74 of 4 0.56Down
Crop72 44 of 4 0.30Down
Midgut77 34 of 4 0.30Down
Tubule47 04 of 4 0.20Down
Hindgut58 24 of 4 0.30Down
Heart26 14 of 4 0.12Down
Fat body103 60 of 4 0.46Down
Ovary454 54 of 4 2.00Up
Testis75 34 of 4 0.30Down
Male accessory glands88 64 of 4 0.40Down
Virgin spermatheca90 71 of 4 0.40Down
Mated spermatheca96 14 of 4 0.43Down
Adult carcass70 10 of 4 0.30Down
Larval CNS237 174 of 4 1.06None
Larval Salivary gland185 84 of 4 0.83None
Larval midgut139 94 of 4 0.62Down
Larval tubule221 124 of 4 1.00None
Larval hindgut108 24 of 4 0.49Down
Larval fat body108 93 of 4 0.50Down
Larval trachea62 64 of 4 0.28Down
Larval carcass129 104 of 4 0.58Down
S2 cells (growing)137 24 of 4 0.61Down
Whole fly223 134 of 4

Looking for FBgn0261786. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime