FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0261788 through 18771 annotations produced 6 hits

Ankyrin 2 /// (Ank2 /// CG32373):

Annotation Number : CG32373
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052373
Gbrowse : chr3L:7643682-7752224 (+) // 100.0 //
Probeset : 1630163_at
Accessions : protein= NP_729293; /// NP_996019;, nucleotide= NM_168229; /// NM_206297;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0052373.
BDGP gene expression has embryonic in situ data for CG32373: 4 pix of staining in 1 body parts.
Homophila reports that CG32373 is a close match (2e-11) to human gene LRP8;APOER2;MCI1 (NP_150643), a gene associated with {Myocardial infarction, susceptibility to}, 608446 (3).
VDRC has 2 RNAi stocks for FBgn0052373 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	0 of 4	0.50	Down
Head	11 ± 2	0 of 4	0.80	None
Eye	4 ± 1	0 of 4	0.33	Down
Thoracicoabdominal ganglion	10 ± 2	0 of 4	0.80	None
Salivary gland	7 ± 2	0 of 4	0.51	None
Crop	2 ± 1	0 of 4	0.20	Down
Midgut	12 ± 3	0 of 4	0.90	None
Tubule	3 ± 0	0 of 4	0.20	Down
Hindgut	4 ± 1	0 of 4	0.30	Down
Heart	11 ± 3	2 of 4	0.85	None
Fat body	13 ± 4	0 of 4	0.95	None
Ovary	19 ± 2	3 of 4	1.40	None
Testis	6 ± 0	2 of 4	0.50	Down
Male accessory glands	2 ± 0	0 of 4	0.20	Down
Virgin spermatheca	7 ± 2	0 of 4	0.52	None
Mated spermatheca	10 ± 2	0 of 4	0.79	None
Adult carcass	1 ± 0	0 of 4	0.10	Down
Larval CNS	1 ± 0	0 of 4	0.10	Down
Larval Salivary gland	4 ± 1	0 of 4	0.31	Down
Larval midgut	225 ± 13	4 of 4	16.39	Up
Larval tubule	3 ± 1	0 of 4	0.30	Down
Larval hindgut	125 ± 10	4 of 4	9.11	Up
Larval fat body	9 ± 2	0 of 4	0.70	None
Larval trachea	15 ± 1	2 of 4	1.10	None
Larval carcass	116 ± 21	4 of 4	8.47	Up
S2 cells (growing)	3 ± 1	0 of 4	0.27	Down
Whole fly	13 ± 1	1 of 4

():

Annotation Number : CG32377
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052377
Gbrowse : chr3L:7659230-7686955 (-) // 100.0 //
Probeset : 1634770_at
Accessions : protein= NP_729284;, nucleotide= NM_168226;
Pathway : 0031594 // neuromuscular junction // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from dir
FlyMine data for FBgn0052377.
VDRC has 10 RNAi stocks for FBgn0052377 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	36 ± 0	4 of 4	20.70	Up
Head	6 ± 2	0 of 4	3.80	None
Eye	3 ± 1	0 of 4	1.97	None
Thoracicoabdominal ganglion	32 ± 5	4 of 4	18.70	Up
Salivary gland	4 ± 1	0 of 4	2.41	None
Crop	1 ± 0	0 of 4	0.90	None
Midgut	0 ± 0	0 of 4	0.50	None
Tubule	1 ± 0	0 of 4	0.60	Down
Hindgut	2 ± 0	0 of 4	1.20	None
Heart	1 ± 0	0 of 4	0.79	None
Fat body	2 ± 2	0 of 4	1.56	None
Ovary	0 ± 0	0 of 4	0.30	None
Testis	2 ± 1	0 of 4	1.40	None
Male accessory glands	1 ± 0	0 of 4	0.70	None
Virgin spermatheca	3 ± 1	0 of 4	1.80	None
Mated spermatheca	3 ± 1	0 of 4	1.91	None
Adult carcass	3 ± 1	0 of 4	2.10	None
Larval CNS	13 ± 4	3 of 4	7.74	Up
Larval Salivary gland	1 ± 0	0 of 4	0.71	None
Larval midgut	2 ± 0	0 of 4	1.50	None
Larval tubule	2 ± 1	0 of 4	1.50	None
Larval hindgut	1 ± 0	0 of 4	0.94	None
Larval fat body	4 ± 1	0 of 4	2.40	None
Larval trachea	1 ± 1	0 of 4	0.97	None
Larval carcass	3 ± 1	0 of 4	1.77	None
S2 cells (growing)	0 ± 0	0 of 4	0.47	None
Whole fly	1 ± 0	0 of 4

():

Annotation Number : CG7462
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085445
Gbrowse : chr3L:7697917-7706720 (-) // 99.89 //
Probeset : 1640337_a_at
Accessions : protein= NP_001036592; /// NP_001097533; /// NP_001097534; /// NP_001097535; /// NP_001097536; /// NP_001097537; /// NP_001097538; /// NP_001097539; /// NP_648148; /// NP_729285;, nucleotide= NM_001043127; /// NM_001043127; /// NM_001104063; /// NM_001104064; /// NM_001104065; /// NM_001104066; /// NM_001104067; /// NM_001104068; /// NM_001104069; /// NM_139891; /// NM_168227;
Pathway : 0031594 // neuromuscular junction // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from dir
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0085445.
Homophila reports that CG7462 is a close match (5e-11) to human gene CADASIL;CASIL;NOTCH3 (NP_000426), a gene associated with Cerebral arteriopathy with subcortical infarcts and leukoencephalopathy, 125310 (3).
VDRC has 10 RNAi stocks for FBgn0085445 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	713 ± 15	4 of 4	25.30	Up
Head	232 ± 16	4 of 4	8.30	Up
Eye	124 ± 15	4 of 4	4.43	Up
Thoracicoabdominal ganglion	839 ± 18	4 of 4	29.80	Up
Salivary gland	8 ± 2	0 of 4	0.29	Down
Crop	7 ± 1	1 of 4	0.30	Down
Midgut	1 ± 0	0 of 4	0.00	Down
Tubule	2 ± 0	0 of 4	0.10	Down
Hindgut	1 ± 0	0 of 4	0.10	Down
Heart	4 ± 1	0 of 4	0.15	Down
Fat body	7 ± 3	0 of 4	0.25	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	2 ± 0	1 of 4	0.10	Down
Male accessory glands	6 ± 2	0 of 4	0.20	Down
Virgin spermatheca	5 ± 1	0 of 4	0.18	Down
Mated spermatheca	4 ± 1	1 of 4	0.15	Down
Adult carcass	17 ± 4	0 of 4	0.60	None
Larval CNS	696 ± 30	4 of 4	24.71	Up
Larval Salivary gland	3 ± 1	0 of 4	0.11	Down
Larval midgut	2 ± 0	0 of 4	0.08	Down
Larval tubule	3 ± 2	0 of 4	0.10	Down
Larval hindgut	3 ± 0	0 of 4	0.12	Down
Larval fat body	2 ± 1	0 of 4	0.10	Down
Larval trachea	4 ± 4	1 of 4	0.14	Down
Larval carcass	5 ± 0	1 of 4	0.20	Down
S2 cells (growing)	1 ± 0	0 of 4	0.07	Down
Whole fly	28 ± 1	4 of 4

():

Annotation Number : CG18768
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085445
Gbrowse : chr3L:7648488-7690761 (-) // 99.87 //
Probeset : 1633313_at
Accessions : protein= NP_001036592; /// NP_001097533; /// NP_001097534; /// NP_001097535; /// NP_001097536; /// NP_001097537; /// NP_001097538; /// NP_001097539; /// NP_648148; /// NP_729285;, nucleotide= NM_001043127; /// NM_001043127; /// NM_001104063; /// NM_001104064; /// NM_001104065; /// NM_001104066; /// NM_001104067; /// NM_001104068; /// NM_001104069; /// NM_139891; /// NM_168227;
Pathway : 0031594 // neuromuscular junction // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from dir
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0085445.
VDRC has 10 RNAi stocks for FBgn0085445 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1408 ± 64	4 of 4	7.00	Up
Head	1477 ± 87	4 of 4	7.30	Up
Eye	3242 ± 251	4 of 4	16.11	Up
Thoracicoabdominal ganglion	1740 ± 73	4 of 4	8.70	Up
Salivary gland	10 ± 3	2 of 4	0.05	Down
Crop	15 ± 1	4 of 4	0.10	Down
Midgut	16 ± 0	4 of 4	0.10	Down
Tubule	4 ± 0	0 of 4	0.00	Down
Hindgut	7 ± 0	3 of 4	0.00	Down
Heart	15 ± 2	4 of 4	0.08	Down
Fat body	17 ± 4	4 of 4	0.09	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	1 ± 0	0 of 4	0.00	Down
Male accessory glands	5 ± 1	1 of 4	0.00	Down
Virgin spermatheca	17 ± 3	4 of 4	0.09	Down
Mated spermatheca	25 ± 7	4 of 4	0.13	Down
Adult carcass	64 ± 4	4 of 4	0.30	Down
Larval CNS	1760 ± 163	4 of 4	8.75	Up
Larval Salivary gland	1 ± 0	0 of 4	0.01	Down
Larval midgut	3 ± 0	0 of 4	0.01	Down
Larval tubule	4 ± 1	0 of 4	0.00	Down
Larval hindgut	5 ± 0	2 of 4	0.02	Down
Larval fat body	2 ± 1	0 of 4	0.00	Down
Larval trachea	91 ± 165	4 of 4	0.46	None
Larval carcass	36 ± 1	4 of 4	0.18	Down
S2 cells (growing)	1 ± 0	0 of 4	0.01	Down
Whole fly	201 ± 18	4 of 4

():

Annotation Number : CG18768
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085445
Gbrowse : chr3L:7649589-7657189 (-) // 100.0 //
Probeset : 1631662_a_at
Accessions : protein= NP_001036592; /// NP_001097533; /// NP_001097534; /// NP_001097535; /// NP_001097536; /// NP_001097537; /// NP_001097538; /// NP_001097539; /// NP_648148; /// NP_729285;, nucleotide= NM_001043127; /// NM_001043127; /// NM_001104063; /// NM_001104064; /// NM_001104065; /// NM_001104066; /// NM_001104067; /// NM_001104068; /// NM_001104069; /// NM_139891; /// NM_168227;
Pathway : 0031594 // neuromuscular junction // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from dir
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0085445.
VDRC has 10 RNAi stocks for FBgn0085445 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	202 ± 2	4 of 4	6.80	Up
Head	242 ± 21	4 of 4	8.10	Up
Eye	1851 ± 227	4 of 4	61.96	Up
Thoracicoabdominal ganglion	218 ± 20	4 of 4	7.30	Up
Salivary gland	6 ± 2	0 of 4	0.20	Down
Crop	7 ± 2	0 of 4	0.30	Down
Midgut	5 ± 2	0 of 4	0.20	Down
Tubule	5 ± 0	0 of 4	0.20	Down
Hindgut	4 ± 0	0 of 4	0.20	Down
Heart	8 ± 0	3 of 4	0.30	Down
Fat body	3 ± 2	0 of 4	0.12	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	25 ± 1	4 of 4	0.90	None
Male accessory glands	7 ± 4	0 of 4	0.30	Down
Virgin spermatheca	7 ± 1	0 of 4	0.27	Down
Mated spermatheca	5 ± 1	0 of 4	0.19	Down
Adult carcass	12 ± 4	1 of 4	0.40	Down
Larval CNS	198 ± 25	4 of 4	6.64	Up
Larval Salivary gland	4 ± 1	0 of 4	0.15	Down
Larval midgut	4 ± 1	0 of 4	0.14	Down
Larval tubule	5 ± 1	0 of 4	0.20	Down
Larval hindgut	1 ± 0	0 of 4	0.06	Down
Larval fat body	11 ± 3	0 of 4	0.40	Down
Larval trachea	22 ± 32	2 of 4	0.74	None
Larval carcass	2 ± 0	0 of 4	0.09	Down
S2 cells (growing)	1 ± 0	0 of 4	0.03	Down
Whole fly	29 ± 2	4 of 4

():

Annotation Number : CG32375
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085445
Gbrowse : chr3L:7710448-7711439 (-) // 100.0 //
Probeset : 1623451_at
Accessions : protein= NP_001036592; /// NP_001097533; /// NP_001097534; /// NP_001097535; /// NP_001097536; /// NP_001097537; /// NP_001097538; /// NP_001097539; /// NP_648148; /// NP_729285;, nucleotide= NM_001043127; /// NM_001043127; /// NM_001104063; /// NM_001104064; /// NM_001104065; /// NM_001104066; /// NM_001104067; /// NM_001104068; /// NM_001104069; /// NM_139891; /// NM_168227;
Pathway : 0031594 // neuromuscular junction // inferred from direct assay /// 0042734 // presynaptic membrane // inferred from dir
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0085445.
VDRC has 10 RNAi stocks for FBgn0085445 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	0 of 4	0.80	None
Head	6 ± 1	0 of 4	1.20	None
Eye	5 ± 1	0 of 4	1.12	None
Thoracicoabdominal ganglion	11 ± 1	2 of 4	2.30	None
Salivary gland	12 ± 6	0 of 4	2.44	None
Crop	11 ± 4	1 of 4	2.30	None
Midgut	16 ± 1	0 of 4	3.20	Up
Tubule	4 ± 0	0 of 4	0.90	None
Hindgut	7 ± 1	0 of 4	1.50	None
Heart	9 ± 3	0 of 4	1.87	None
Fat body	10 ± 4	0 of 4	1.96	None
Ovary	4 ± 1	0 of 4	0.90	None
Testis	6 ± 2	2 of 4	1.30	None
Male accessory glands	7 ± 3	0 of 4	1.40	None
Virgin spermatheca	3 ± 0	0 of 4	0.73	None
Mated spermatheca	2 ± 1	0 of 4	0.56	None
Adult carcass	9 ± 3	1 of 4	1.80	None
Larval CNS	4 ± 1	0 of 4	0.91	None
Larval Salivary gland	13 ± 3	0 of 4	2.67	None
Larval midgut	11 ± 2	0 of 4	2.19	None
Larval tubule	1 ± 0	0 of 4	0.30	None
Larval hindgut	9 ± 1	0 of 4	1.88	None
Larval fat body	15 ± 1	0 of 4	3.00	Up
Larval trachea	7 ± 5	0 of 4	1.55	None
Larval carcass	8 ± 1	0 of 4	1.59	None
S2 cells (growing)	7 ± 1	0 of 4	1.43	None
Whole fly	5 ± 3	0 of 4

Looking for FBgn0261788. 6 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720