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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261790 through 18771 annotations produced 1 hits



():

Annotation Number : CG18591
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031962
Gbrowse : chr2L:7884931-7885425 (-) // 100.0 //
Probeset : 1623250_at
Accessions : protein= NP_609162;, nucleotide= NM_135318;
Pathway : via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation /// 000838
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00305
FlyMine data for FBgn0031962.
BioGrid reports that CG18591 interacts with CG7768 .
VDRC has 3 RNAi stocks for FBgn0031962 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain310 64 of 4 0.50Down
Head289 174 of 4 0.40Down
Eye344 164 of 4 0.53Down
Thoracicoabdominal ganglion338 104 of 4 0.50Down
Salivary gland341 214 of 4 0.52Down
Crop336 104 of 4 0.50Down
Midgut250 54 of 4 0.40Down
Tubule267 84 of 4 0.40Down
Hindgut285 84 of 4 0.40Down
Heart258 94 of 4 0.39Down
Fat body218 154 of 4 0.33Down
Ovary1063 104 of 4 1.60Up
Testis251 44 of 4 0.40Down
Male accessory glands830 294 of 4 1.30Up
Virgin spermatheca347 74 of 4 0.53Down
Mated spermatheca370 154 of 4 0.57Down
Adult carcass185 184 of 4 0.30Down
Larval CNS1123 354 of 4 1.72Up
Larval Salivary gland972 264 of 4 1.49Up
Larval midgut241 44 of 4 0.37Down
Larval tubule356 44 of 4 0.50Down
Larval hindgut373 154 of 4 0.57Down
Larval fat body287 204 of 4 0.40Down
Larval trachea710 734 of 4 1.09None
Larval carcass445 254 of 4 0.68Down
S2 cells (growing)683 304 of 4 1.04None
Whole fly654 154 of 4

Looking for FBgn0261790. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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