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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261797 through 18771 annotations produced 3 hits



():

Annotation Number : CG7507
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010349
Gbrowse : chr3L:4812760-4825733 (-) // 100.0 //
Probeset : 1637137_a_at
Accessions : protein= NP_523929; /// NP_729034;, nucleotide= NM_079205; /// NM_168103;
Pathway : 0000776 // kinetochore // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from ele
FlyMine data for FBgn0010349.
Homophila reports that CG7507 is a close match (2e-152) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
BioGrid reports that CG7507 interacts with CG3510 CG9206 CG9206 CG9206 CG9206 CG7765 CG9206 CG9206 .
VDRC has 2 RNAi stocks for FBgn0010349 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 3.60None
Head2 10 of 4 1.70None
Eye0 00 of 4 0.51None
Thoracicoabdominal ganglion1 00 of 4 1.20None
Salivary gland2 00 of 4 1.56None
Crop8 01 of 4 5.70Up
Midgut1 00 of 4 1.00None
Tubule1 00 of 4 0.80None
Hindgut7 21 of 4 5.30None
Heart1 00 of 4 1.17None
Fat body2 20 of 4 1.53None
Ovary2 00 of 4 1.40None
Testis0 00 of 4 0.50None
Male accessory glands3 10 of 4 2.60None
Virgin spermatheca2 10 of 4 1.71None
Mated spermatheca2 10 of 4 1.83None
Adult carcass3 10 of 4 2.20None
Larval CNS0 00 of 4 0.47None
Larval Salivary gland5 10 of 4 3.73None
Larval midgut3 10 of 4 2.25None
Larval tubule4 10 of 4 3.30None
Larval hindgut3 00 of 4 2.24None
Larval fat body8 20 of 4 5.90None
Larval trachea0 00 of 4 0.56None
Larval carcass6 10 of 4 4.66Up
S2 cells (growing)8 33 of 4 6.07None
Whole fly1 00 of 4



():

Annotation Number : CG7507
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010349
Gbrowse : chr3L:4812760-4825733 (-) // 100.0 //
Probeset : 1632408_at
Accessions : protein= NP_523929; /// NP_729034;, nucleotide= NM_079205; /// NM_168103;
Pathway : 0000776 // kinetochore // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from ele
FlyMine data for FBgn0010349.
Homophila reports that CG7507 is a close match (2e-152) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
BioGrid reports that CG7507 interacts with CG3510 CG9206 CG9206 CG9206 CG9206 CG7765 CG9206 CG9206 .
VDRC has 2 RNAi stocks for FBgn0010349 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.90None
Head0 00 of 4 1.00None
Eye1 10 of 4 2.17None
Thoracicoabdominal ganglion0 00 of 4 1.00None
Salivary gland1 00 of 4 2.20None
Crop1 00 of 4 1.30None
Midgut1 00 of 4 1.50None
Tubule1 00 of 4 1.60None
Hindgut0 00 of 4 0.70None
Heart1 00 of 4 2.26None
Fat body3 20 of 4 4.06None
Ovary1 00 of 4 1.20None
Testis0 00 of 4 0.30Down
Male accessory glands1 00 of 4 1.70None
Virgin spermatheca1 00 of 4 2.06None
Mated spermatheca1 00 of 4 1.60None
Adult carcass2 00 of 4 2.60None
Larval CNS0 00 of 4 0.83None
Larval Salivary gland1 00 of 4 1.57Up
Larval midgut0 00 of 4 1.03None
Larval tubule1 00 of 4 1.30None
Larval hindgut0 00 of 4 0.91None
Larval fat body0 00 of 4 1.00None
Larval trachea2 10 of 4 2.94None
Larval carcass1 00 of 4 1.14None
S2 cells (growing)2 10 of 4 2.94None
Whole fly0 00 of 4



():

Annotation Number : CG7507
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010349
Gbrowse : chr3L:4807367-4825733 (-) // 100.0 //
Probeset : 1623383_at
Accessions : protein= NP_523929; /// NP_729034;, nucleotide= NM_079205; /// NM_168103;
Pathway : 0000776 // kinetochore // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from ele
FlyMine data for FBgn0010349.
Homophila reports that CG7507 is a close match (2e-152) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
BioGrid reports that CG7507 interacts with CG3510 CG9206 CG9206 CG9206 CG9206 CG7765 CG9206 CG9206 .
VDRC has 2 RNAi stocks for FBgn0010349 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain622 144 of 4 2.40Up
Head232 84 of 4 0.90None
Eye307 264 of 4 1.19None
Thoracicoabdominal ganglion763 384 of 4 2.90Up
Salivary gland445 244 of 4 1.72Up
Crop259 64 of 4 1.00None
Midgut289 34 of 4 1.10None
Tubule515 74 of 4 2.00Up
Hindgut275 14 of 4 1.10None
Heart257 134 of 4 0.99None
Fat body166 124 of 4 0.64Down
Ovary566 194 of 4 2.20Up
Testis146 74 of 4 0.60Down
Male accessory glands235 54 of 4 0.90None
Virgin spermatheca206 94 of 4 0.80Down
Mated spermatheca280 184 of 4 1.08None
Adult carcass191 84 of 4 0.70Down
Larval CNS616 134 of 4 2.38Up
Larval Salivary gland786 344 of 4 3.04Up
Larval midgut462 134 of 4 1.79Up
Larval tubule336 144 of 4 1.30Up
Larval hindgut512 64 of 4 1.98Up
Larval fat body177 54 of 4 0.70Down
Larval trachea716 404 of 4 2.77Up
Larval carcass350 204 of 4 1.35Up
S2 cells (growing)394 144 of 4 1.52Up
Whole fly259 104 of 4

Looking for FBgn0261797. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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