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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261801 through 18771 annotations produced 2 hits



():

Annotation Number : CG14911
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035701
Gbrowse : chr3L:6477152-6478156 (+) // 100.0 //
Probeset : 1637304_at
Accessions : protein= NP_648045;, nucleotide= NM_139788;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035701.
BioGrid reports that CG14911 interacts with CG31247 .
VDRC has 5 RNAi stocks for FBgn0035701 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 03 of 4 1.70None
Head5 ± 10 of 4 0.60None
Eye3 ± 10 of 4 0.48None
Thoracicoabdominal ganglion5 ± 10 of 4 0.70None
Salivary gland7 ± 20 of 4 0.93None
Crop4 ± 20 of 4 0.60None
Midgut6 ± 20 of 4 0.80None
Tubule3 ± 00 of 4 0.40Down
Hindgut3 ± 00 of 4 0.40None
Heart1 ± 00 of 4 0.19None
Fat body10 ± 40 of 4 1.26None
Ovary8 ± 12 of 4 1.00None
Testis5 ± 10 of 4 0.60None
Male accessory glands12 ± 20 of 4 1.50None
Virgin spermatheca3 ± 10 of 4 0.48None
Mated spermatheca3 ± 10 of 4 0.45None
Adult carcass7 ± 30 of 4 0.90None
Larval CNS17 ± 14 of 4 2.16Up
Larval Salivary gland11 ± 00 of 4 1.43None
Larval midgut1 ± 00 of 4 0.15None
Larval tubule4 ± 20 of 4 0.60None
Larval hindgut5 ± 10 of 4 0.70None
Larval fat body4 ± 10 of 4 0.50None
Larval trachea7 ± 42 of 4 0.94None
Larval carcass5 ± 20 of 4 0.73None
S2 cells (growing)9 ± 10 of 4 1.16None
Whole fly8 ± 20 of 4



():

Annotation Number : CG14910
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035700
Gbrowse : chr3L:6454765-6455269 (+) // 100.0 //
Probeset : 1641391_at
Accessions : protein= NP_648044;, nucleotide= NM_139787;
FlyMine data for FBgn0035700.
VDRC has 5 RNAi stocks for FBgn0035700 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 11 of 4 1.10None
Head10 ± 00 of 4 1.60None
Eye4 ± 00 of 4 0.65None
Thoracicoabdominal ganglion7 ± 10 of 4 1.20None
Salivary gland22 ± 60 of 4 3.45None
Crop8 ± 20 of 4 1.30None
Midgut10 ± 20 of 4 1.60None
Tubule3 ± 00 of 4 0.50Down
Hindgut7 ± 00 of 4 1.10None
Heart3 ± 10 of 4 0.52None
Fat body15 ± 10 of 4 2.35Up
Ovary6 ± 10 of 4 1.00None
Testis4 ± 20 of 4 0.70None
Male accessory glands10 ± 20 of 4 1.50None
Virgin spermatheca10 ± 11 of 4 1.57None
Mated spermatheca9 ± 11 of 4 1.45None
Adult carcass9 ± 40 of 4 1.40None
Larval CNS10 ± 10 of 4 1.61None
Larval Salivary gland6 ± 20 of 4 1.00None
Larval midgut13 ± 30 of 4 2.03None
Larval tubule4 ± 10 of 4 0.70None
Larval hindgut6 ± 10 of 4 0.92None
Larval fat body6 ± 20 of 4 0.90None
Larval trachea3 ± 20 of 4 0.52None
Larval carcass5 ± 10 of 4 0.88None
S2 cells (growing)7 ± 00 of 4 1.19None
Whole fly6 ± 20 of 4

Looking for FBgn0261801. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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