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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261801 through 18771 annotations produced 2 hits



():

Annotation Number : CG14910
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035700
Gbrowse : chr3L:6454765-6455269 (+) // 100.0 //
Probeset : 1641391_at
Accessions : protein= NP_648044;, nucleotide= NM_139787;
FlyMine data for FBgn0035700.
VDRC has 5 RNAi stocks for FBgn0035700 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 11 of 4 1.10None
Head10 00 of 4 1.60None
Eye4 00 of 4 0.65None
Thoracicoabdominal ganglion7 10 of 4 1.20None
Salivary gland22 60 of 4 3.45None
Crop8 20 of 4 1.30None
Midgut10 20 of 4 1.60None
Tubule3 00 of 4 0.50Down
Hindgut7 00 of 4 1.10None
Heart3 10 of 4 0.52None
Fat body15 10 of 4 2.35Up
Ovary6 10 of 4 1.00None
Testis4 20 of 4 0.70None
Male accessory glands10 20 of 4 1.50None
Virgin spermatheca10 11 of 4 1.57None
Mated spermatheca9 11 of 4 1.45None
Adult carcass9 40 of 4 1.40None
Larval CNS10 10 of 4 1.61None
Larval Salivary gland6 20 of 4 1.00None
Larval midgut13 30 of 4 2.03None
Larval tubule4 10 of 4 0.70None
Larval hindgut6 10 of 4 0.92None
Larval fat body6 20 of 4 0.90None
Larval trachea3 20 of 4 0.52None
Larval carcass5 10 of 4 0.88None
S2 cells (growing)7 00 of 4 1.19None
Whole fly6 20 of 4



():

Annotation Number : CG14911
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035701
Gbrowse : chr3L:6477152-6478156 (+) // 100.0 //
Probeset : 1637304_at
Accessions : protein= NP_648045;, nucleotide= NM_139788;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035701.
BioGrid reports that CG14911 interacts with CG31247 .
VDRC has 5 RNAi stocks for FBgn0035701 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 03 of 4 1.70None
Head5 10 of 4 0.60None
Eye3 10 of 4 0.48None
Thoracicoabdominal ganglion5 10 of 4 0.70None
Salivary gland7 20 of 4 0.93None
Crop4 20 of 4 0.60None
Midgut6 20 of 4 0.80None
Tubule3 00 of 4 0.40Down
Hindgut3 00 of 4 0.40None
Heart1 00 of 4 0.19None
Fat body10 40 of 4 1.26None
Ovary8 12 of 4 1.00None
Testis5 10 of 4 0.60None
Male accessory glands12 20 of 4 1.50None
Virgin spermatheca3 10 of 4 0.48None
Mated spermatheca3 10 of 4 0.45None
Adult carcass7 30 of 4 0.90None
Larval CNS17 14 of 4 2.16Up
Larval Salivary gland11 00 of 4 1.43None
Larval midgut1 00 of 4 0.15None
Larval tubule4 20 of 4 0.60None
Larval hindgut5 10 of 4 0.70None
Larval fat body4 10 of 4 0.50None
Larval trachea7 42 of 4 0.94None
Larval carcass5 20 of 4 0.73None
S2 cells (growing)9 10 of 4 1.16None
Whole fly8 20 of 4

Looking for FBgn0261801. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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