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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261802 through 18771 annotations produced 2 hits



():

Annotation Number : CG6448
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032976
Gbrowse : chr2L:22134350-22159735 (+) // 100.0 //
Probeset : 1631046_s_at
Accessions : protein= NP_001097188; /// NP_001097189; /// NP_610134; /// NP_724384;, nucleotide= NM_001103718; /// NM_001103719; /// NM_136290; /// NM_165411;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032976.
BDGP gene expression has embryonic in situ data for CG6448: 14 pix of staining in 7 body parts.
VDRC has 5 RNAi stocks for FBgn0032976 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain225 74 of 4 0.70None
Head382 274 of 4 1.20None
Eye298 144 of 4 0.97None
Thoracicoabdominal ganglion366 114 of 4 1.20None
Salivary gland539 194 of 4 1.74Up
Crop1810 554 of 4 5.90Up
Midgut678 84 of 4 2.20Up
Tubule513 254 of 4 1.70Up
Hindgut657 64 of 4 2.10Up
Heart220 164 of 4 0.71Down
Fat body167 234 of 4 0.54Down
Ovary460 154 of 4 1.50Up
Testis67 14 of 4 0.20Down
Male accessory glands445 94 of 4 1.40Up
Virgin spermatheca296 204 of 4 0.96None
Mated spermatheca424 394 of 4 1.37None
Adult carcass284 64 of 4 0.90None
Larval CNS349 304 of 4 1.13None
Larval Salivary gland629 434 of 4 2.04Up
Larval midgut586 154 of 4 1.90Up
Larval tubule249 204 of 4 0.80None
Larval hindgut761 144 of 4 2.46Up
Larval fat body833 834 of 4 2.70Up
Larval trachea924 324 of 4 2.99Up
Larval carcass680 174 of 4 2.20Up
S2 cells (growing)594 294 of 4 1.92Up
Whole fly309 274 of 4



():

Annotation Number : CG15216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032978
Gbrowse : chr2L:22161299-22162987 (+) // 100.0 //
Probeset : 1629461_at
Accessions : protein= NP_610136;, nucleotide= NM_136292;
FlyMine data for FBgn0032978.
VDRC has 5 RNAi stocks for FBgn0032978 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 14 of 4 8.40Up
Head5 21 of 4 1.60None
Eye0 00 of 4 0.21Down
Thoracicoabdominal ganglion19 44 of 4 5.20Up
Salivary gland3 10 of 4 1.01None
Crop5 20 of 4 1.50None
Midgut2 10 of 4 0.50None
Tubule2 00 of 4 0.50Down
Hindgut4 10 of 4 1.20None
Heart2 00 of 4 0.64None
Fat body2 20 of 4 0.66None
Ovary2 00 of 4 0.60None
Testis2 00 of 4 0.60None
Male accessory glands7 20 of 4 1.90None
Virgin spermatheca3 10 of 4 0.90None
Mated spermatheca0 00 of 4 0.21Down
Adult carcass4 20 of 4 1.30None
Larval CNS10 04 of 4 2.85Up
Larval Salivary gland4 00 of 4 1.22None
Larval midgut1 00 of 4 0.42None
Larval tubule5 10 of 4 1.40None
Larval hindgut4 10 of 4 1.33None
Larval fat body7 00 of 4 1.90Up
Larval trachea3 20 of 4 0.82None
Larval carcass4 10 of 4 1.18None
S2 cells (growing)2 00 of 4 0.69None
Whole fly3 00 of 4

Looking for FBgn0261802. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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