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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0261804 through 18771 annotations produced 4 hits



():

Annotation Number : CG31786
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051786
Gbrowse : chr2L:18209738-18215853 (-) // 100.0 //
Probeset : 1641638_at
Accessions : protein= NP_609875;, nucleotide= NM_136031;
FlyMine data for FBgn0051786.
VDRC has 5 RNAi stocks for FBgn0051786 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 14 of 4 6.90Up
Head1 ± 00 of 4 0.50None
Eye1 ± 00 of 4 0.55None
Thoracicoabdominal ganglion19 ± 24 of 4 7.80Up
Salivary gland3 ± 00 of 4 1.49None
Crop4 ± 10 of 4 1.80None
Midgut3 ± 20 of 4 1.40None
Tubule2 ± 00 of 4 0.80None
Hindgut2 ± 10 of 4 1.10None
Heart1 ± 00 of 4 0.40None
Fat body5 ± 60 of 4 2.16None
Ovary0 ± 00 of 4 0.30None
Testis2 ± 00 of 4 1.00None
Male accessory glands0 ± 00 of 4 0.40None
Virgin spermatheca2 ± 00 of 4 0.77None
Mated spermatheca3 ± 10 of 4 1.22None
Adult carcass1 ± 00 of 4 0.70None
Larval CNS5 ± 20 of 4 2.13None
Larval Salivary gland2 ± 10 of 4 1.04None
Larval midgut4 ± 10 of 4 1.84None
Larval tubule1 ± 00 of 4 0.50None
Larval hindgut3 ± 10 of 4 1.18None
Larval fat body1 ± 00 of 4 0.50None
Larval trachea4 ± 20 of 4 1.69None
Larval carcass1 ± 00 of 4 0.77None
S2 cells (growing)1 ± 00 of 4 0.40None
Whole fly2 ± 10 of 4



():

Annotation Number : CG31746
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259819
Gbrowse : chr2L:18161428-18193067 (-) // 100.0 //
Probeset : 1639875_at
Accessions : protein= NP_724101;, nucleotide= NM_165245;
Interpro : 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0008239 // dipeptidyl-peptidase activ
FlyMine data for FBgn0259819.
BioGrid reports that CG31746 interacts with CG9986 .
VDRC has 5 RNAi stocks for FBgn0259819 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 14 of 4 7.40Up
Head8 ± 10 of 4 2.00None
Eye0 ± 00 of 4 0.20None
Thoracicoabdominal ganglion16 ± 24 of 4 4.10Up
Salivary gland15 ± 30 of 4 3.76Up
Crop2 ± 10 of 4 0.60None
Midgut10 ± 10 of 4 2.60Up
Tubule4 ± 00 of 4 1.00None
Hindgut2 ± 10 of 4 0.60None
Heart3 ± 00 of 4 0.85None
Fat body6 ± 20 of 4 1.45None
Ovary4 ± 00 of 4 1.10None
Testis4 ± 10 of 4 1.10None
Male accessory glands7 ± 21 of 4 1.80None
Virgin spermatheca2 ± 00 of 4 0.49None
Mated spermatheca5 ± 00 of 4 1.33None
Adult carcass5 ± 10 of 4 1.30None
Larval CNS6 ± 20 of 4 1.50None
Larval Salivary gland3 ± 00 of 4 0.90None
Larval midgut6 ± 10 of 4 1.66None
Larval tubule5 ± 10 of 4 1.40None
Larval hindgut2 ± 10 of 4 0.67None
Larval fat body6 ± 20 of 4 1.70None
Larval trachea5 ± 11 of 4 1.20None
Larval carcass3 ± 10 of 4 0.75None
S2 cells (growing)1 ± 00 of 4 0.43None
Whole fly4 ± 10 of 4



():

Annotation Number : S.C2L002273
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259819
Gbrowse : chr2L:18197501-18200937 (-) // 100.0 //
Probeset : 1627547_at
Accessions : protein= NP_724101;, nucleotide= NM_165245;
Interpro : 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0008239 // dipeptidyl-peptidase activ
FlyMine data for FBgn0259819.
VDRC has 5 RNAi stocks for FBgn0259819 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 13 of 4 5.60Up
Head2 ± 00 of 4 0.90None
Eye1 ± 10 of 4 0.59None
Thoracicoabdominal ganglion12 ± 21 of 4 4.30Up
Salivary gland6 ± 10 of 4 2.28None
Crop1 ± 10 of 4 0.60None
Midgut2 ± 00 of 4 0.70None
Tubule2 ± 00 of 4 0.90None
Hindgut3 ± 10 of 4 1.10None
Heart2 ± 00 of 4 0.73None
Fat body2 ± 10 of 4 0.72None
Ovary3 ± 10 of 4 1.00None
Testis8 ± 22 of 4 2.70None
Male accessory glands4 ± 20 of 4 1.60None
Virgin spermatheca2 ± 10 of 4 0.75None
Mated spermatheca1 ± 00 of 4 0.55None
Adult carcass4 ± 20 of 4 1.50None
Larval CNS3 ± 10 of 4 1.11None
Larval Salivary gland3 ± 10 of 4 1.10None
Larval midgut5 ± 10 of 4 1.71None
Larval tubule2 ± 10 of 4 0.90None
Larval hindgut1 ± 00 of 4 0.38None
Larval fat body3 ± 10 of 4 1.20None
Larval trachea1 ± 00 of 4 0.52None
Larval carcass3 ± 00 of 4 1.13None
S2 cells (growing)2 ± 00 of 4 0.69None
Whole fly3 ± 00 of 4



():

Annotation Number : CG15157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259819
Gbrowse : chr2L:18203645-18205684 (-) // 100.0 //
Probeset : 1635015_at
Accessions : protein= NP_724101;, nucleotide= NM_165245;
Interpro : 0008235 // metalloexopeptidase activity // inferred from electronic annotation /// 0008239 // dipeptidyl-peptidase activ
FlyMine data for FBgn0259819.
VDRC has 5 RNAi stocks for FBgn0259819 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 3.60Up
Head2 ± 00 of 4 0.70None
Eye3 ± 10 of 4 0.98None
Thoracicoabdominal ganglion8 ± 22 of 4 2.10None
Salivary gland9 ± 40 of 4 2.36None
Crop6 ± 10 of 4 1.60None
Midgut2 ± 10 of 4 0.60None
Tubule3 ± 00 of 4 0.80Down
Hindgut2 ± 00 of 4 0.60None
Heart2 ± 10 of 4 0.56None
Fat body5 ± 10 of 4 1.34None
Ovary2 ± 10 of 4 0.60None
Testis3 ± 10 of 4 0.80None
Male accessory glands4 ± 20 of 4 1.10None
Virgin spermatheca4 ± 10 of 4 1.10None
Mated spermatheca5 ± 10 of 4 1.24None
Adult carcass5 ± 20 of 4 1.30None
Larval CNS4 ± 00 of 4 1.12None
Larval Salivary gland5 ± 20 of 4 1.42None
Larval midgut3 ± 20 of 4 0.88None
Larval tubule1 ± 00 of 4 0.50None
Larval hindgut6 ± 00 of 4 1.60None
Larval fat body6 ± 20 of 4 1.60None
Larval trachea3 ± 10 of 4 0.91None
Larval carcass1 ± 00 of 4 0.42None
S2 cells (growing)4 ± 10 of 4 1.09None
Whole fly4 ± 10 of 4

Looking for FBgn0261804. 4 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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